(no subject)

On Fri, Dec 11, 2020 at 9:03 PM Anas Jamshed wrote:

On Fri, Dec 11, 2020 at 8:37 PM Rasmus Liland wrote:

I think that's too many unspecific lines
and too large files directly here on
email (24MiB!).

Would you please narrow down your
question.

E-MTAB is an original sample data file and another one is normalized data
file  but I don't know why I get just one gene(up reg) when I apply top
table and decide test function
results<-decideTests(fit3,adjust.method="fdr",p=0.05)
results
summary(results)
cont.matrix <- makeContrasts(eset, levels=design)
fit.cont <- contrasts.fit(fit, cont.matrix)
fit.cont
fit.cont<- eBayes(fit.cont)
fit.cont
results<-decideTests(fit.cont,adjust.method="fdr",p=0.001)

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