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Lattice 3d coordinate transformation

4 messages · ilai, Deepayan Sarkar

Original
ilai
# 
Hello List!
I asked this before (with no solution), but maybe this time... I'm
trying to project a surface to the XY under a 3d cloud using lattice.
I can project contour lines following the code for fig 13.7 in
Deepayan Sarkar's "Lattice, Multivariate Data Visualization with R",
but it fails when I try to "color them in" using panel.levelplot.
?utilities.3d says there may be some bugs, and I think
ltransform3dto3d() is not precise (where did I hear that?), but is
this really the source of my problem? Is there a (simple?) workaround,
maybe using 3d.wire but projecting it to XY? How? Please, any insight
may be useful.
Thanks in advance,
Elai.

A working example:

  ## data "d" and predicted "surf":
set.seed(1113)
d <- data.frame(x=runif(30),y=runif(30),g=gl(2,15))
d$z <- with(d,rnorm(30,3*asin(x^2)-5*y^as.integer(g),.1))
d$z <- d$z+min(d$z)^2
surf <- by(d,d$g,function(D){
  fit <- lm(z~poly(x,2)*poly(y,2),data=D)
  outer(seq(0,1,l=10),seq(0,1,l=10),function(x,y,...)
predict(fit,data.frame(x=x,y=y)))
})
##
# This works to get contours:
require(lattice)
cloud(z~x+y|g,data=d,layout=c(2,1), type='h', lwd=3, par.box=list(lty=0),
      scales=list(z=list(arrows=F,tck=0)),
      panel.3d.cloud = function(x, y, z,rot.mat, distance,
zlim.scaled, nlevels=20,...){
        add.line <- trellis.par.get("add.line")
        clines <- contourLines(surf[[packet.number()]],nlevels = nlevels)
        for (ll in clines) {
          m <- ltransform3dto3d(rbind(ll$x-.5, ll$y-.5,
zlim.scaled[1]), rot.mat,
                                distance)
          panel.lines(m[1,], m[2,], col = add.line$col, lty = add.line$lty,
                      lwd = add.line$lwd)
        }
        panel.3dscatter(x, y, z, rot.mat, distance, zlim.scaled =
zlim.scaled, ...)
      }
      )
# But using levelplot:
panel.3d.levels <- function(x, y, z,rot.mat, distance, zlim.scaled,...)
{
    zz <- surf[[packet.number()]]
    n <- nrow(zz)
    s <- seq(-.5,.5,l=n)
    m <- ltransform3dto3d(rbind(rep(s,n),rep(s,each=n),zlim.scaled[1]),
                          rot.mat, distance)
    panel.levelplot(m[1,],m[2,],zz,1:n^2,col.regions=heat.colors(20))
    panel.3dscatter(x, y, z, rot.mat, distance, zlim.scaled = zlim.scaled, ...)
  }
cloud(z~x+y|g,data=d,layout=c(2,1), type='h', panel.3d.cloud = panel.3d.levels,
      scales=list(z=list(arrows=F,tck=0)),par.box=list(lty=0),lwd=3)
# I also tried to "fill" between contours but can't figure out what to
do with the edges and how to incorporate the x,y limits to 1st and nth
levels.
panel.3d.contour <- function(x, y, z,rot.mat, distance,xlim,ylim,
zlim.scaled,nlevels=20,...)
{
    add.line <- trellis.par.get("add.line")
    zz <- surf[[packet.number()]]
    clines <- contourLines(zz,nlevels = nlevels)
    colreg <- heat.colors(max(unlist(lapply(clines,function(ll) ll$level))))
    for (i in 2:length(clines)) {
      ll <- clines[[i]]
      ll0 <- clines[[i-1]]
      m <- ltransform3dto3d(rbind(ll$x-.5, ll$y-.5, zlim.scaled[1]),
rot.mat, distance)
      m0 <- ltransform3dto3d(rbind(ll0$x-.5, ll0$y-.5,
zlim.scaled[1]), rot.mat, distance)
      xvec <- c(m0[1,],m[1,ncol(m):1])
      yvec <- c(m0[2,],m[2,ncol(m):1])
      panel.polygon(xvec,yvec,col=colreg[ll$level],border='transparent')
      panel.lines(m[1,], m[2,], col = add.line$col, lty = add.line$lty,
                  lwd = add.line$lwd)
    }
    panel.3dscatter(x, y, z, rot.mat, distance, zlim.scaled = zlim.scaled, ...)
  }
cloud(z~x+y|g,data=d,layout=c(2,1), type='h', panel.3d.cloud = panel.3d.contour,
      scales=list(z=list(arrows=F,tck=0)),par.box=list(lty=0),lwd=3)

#############################################################################
ilai
# 
Oops. Obviously I mean
"> A working example:

        
On Thu, Feb 9, 2012 at 12:13 PM, ilai <keren at math.montana.edu> wrote:

            

      
      
      
    

  
  


  


      

    

    
1 day later

    

      
      

        


  

        

      Deepayan Sarkar
    

    

      
      #
    

  


  

      
On Fri, Feb 10, 2012 at 12:43 AM, ilai <keren at math.montana.edu> wrote:

            

      
      
      
    

        
I don't think this will be that simple. panel.levelplot() essentially
draws a bunch of colored rectangles. For a "3D" projection, each of
these will become (four-sided) polygons. You need to compute the
coordinates of those polygons, figure out their fill colors (possibly
using ?level.colors) and then draw them.

-Deepayan

            

      
      
      
    

        

      
      
    

  
  


  


      

    

    

      
      

        


  

        

      ilai
    

    

      
      #
    

  


  

      
Thank you Deepayan, your answer put me on the path to SOLVED !!!
Actually passing projected corners to panel.rect was the first thing I
tried, but couldn't get it to work. However, panel.3dpolygon in
latticeExtra did the trick.
I'm posting it here for completion.

 require(lattice) ; require(latticeExtra)
set.seed(1113)
d <- data.frame(x=runif(30),y=runif(30),g=gl(2,15))
d$z <- with(d,rnorm(30,3*asin(x^2)-5*y^as.integer(g),.1))
d$z <- d$z+min(d$z)^2
surf <- by(d,d$g,function(D){
  fit <- lm(z~poly(x,2)*poly(y,2),data=D)
  outer(seq(0,1,l=10),seq(0,1,l=10),function(x,y,...)
predict(fit,data.frame(x=x,y=y)))
})
panel.3d.surf <- function(x, y, z, rot.mat, distance, zlim.scaled, ...){
    zz <- surf[[packet.number()]] ; n <- nrow(zz)
    lp <- level.colors(zz, at = do.breaks(range(zz), 20), col.regions
= heat.colors(20))
    s <- seq(-.5,.5,l=n) ; cntrds <- expand.grid(s,s) ; index <- 0
    apply(cntrds,1,function(i){
      index <<- index+1
      xx <- i[1]+c(-.5,-.5,.5,.5)/(n-1) ; yy <- i[2]+c(-.5,.5,.5,-.5)/(n-1)
      panel.3dpolygon(xx,yy, zlim.scaled[1], rot.mat, distance,
                      border=lp[index], col=lp[index],...)
    })
    panel.3dscatter(x, y, z, rot.mat, distance, zlim.scaled = zlim.scaled, ...)
  }
cloud(z~x+y|g,data=d,layout=c(2,1), type='h', panel.3d.cloud = panel.3d.surf,
      zoom = 1,screen=list(z= 21,y=0,x=-60),aspect = c(1,1), panel.aspect = 1,
      scales=list(z=list(arrows=F,tck=0),x=list(distance=.75)),
      par.box=list(lwd=NA),lwd=3)

## Beautiful !

On Sat, Feb 11, 2012 at 6:00 AM, Deepayan Sarkar

        
<deepayan.sarkar at gmail.com> wrote: