Despite mentioning the job name, partition and node on which the job should
run, R is still running on compute node 01 with no migration to other
nodes. I am presenting the script below, any help is appreciated:
!/bin/bash
#SBATCH --job-name=10/0.30
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=16
#SBATCH --partition=debug
#SBATCH --exclude=compute[23,31-33,40]
#SBATCH --nodelist=compute[07]
echo "program started"
cd /home1/ASP/sourav/coarse_grained_simulations/10/0.30
sbatch /home1/ASP/R-3.3.1/bin/R CMD BATCH --no-save --no-restore test_dcd.R
test_dcd.out
On running squeue to get the list of running jobs:
12169 nnvi R ASP R 7:08 1 compute01
12172 nnvi R ASP R 5:03 1 compute01
12175 nnvi R ASP R 3:26 1 compute01
12177 nnvi R ASP R 0:02 1 compute01
Regards
Sourav
R jobs on SLURM running on a single node only
2 messages · S....v ..., Jeff Newmiller
Cross-posting [1] is not acceptable on R-help, particularly if you don't let reasonable time pass and inform us of the other posting. Topics not related to the R language are off-topic here (this is about slurm, not R). [1] http://stackoverflow.com/questions/38991287/r-jobs-on-slurm-running-on-a-single-node-only
Sent from my phone. Please excuse my brevity. On August 17, 2016 1:29:57 AM PDT, S....v ... <s.........0 at gmail.com> wrote: >Despite mentioning the job name, partition and node on which the job >should >run, R is still running on compute node 01 with no migration to other >nodes. I am presenting the script below, any help is appreciated: > >!/bin/bash >#SBATCH --job-name=10/0.30 >#SBATCH --nodes=1 >#SBATCH --ntasks-per-node=16 >#SBATCH --partition=debug >#SBATCH --exclude=compute[23,31-33,40] >#SBATCH --nodelist=compute[07] > >echo "program started" >cd /home1/ASP/sourav/coarse_grained_simulations/10/0.30 > >sbatch /home1/ASP/R-3.3.1/bin/R CMD BATCH --no-save --no-restore >test_dcd.R >test_dcd.out > >On running squeue to get the list of running jobs: > > 12169 nnvi R ASP R 7:08 1 compute01 > 12172 nnvi R ASP R 5:03 1 compute01 > 12175 nnvi R ASP R 3:26 1 compute01 > 12177 nnvi R ASP R 0:02 1 compute01 > > >Regards >Sourav > > [[alternative HTML version deleted]] > >______________________________________________ >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code.