Dear All I was trying the supplementary file?GS_main.R from https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.3475 I have tried to prevent latex compilation from failing using Sweave after trying all the online fixes I could find including using Rterm? I could fix it if it was in the input but not in the output? I am using R version 4.2 on windows 11 with 64 GB memory Sweave code \begin{small} <<r0>>= library(emdbook) # version 1.3.12 library(bbmle) # version 1.0.23.1 library(pbmcapply) # version 1.5.0? library(tidyverse) # version 1.3.0 library(ggpubr) # version 0.4.0 @ %% <<r7>>= summaryTable <- tibble(model = m.names, ? ? ? ?dim = m.dims[model],? ? ? ? ? ? ? ? ? ? ? ? ?score = m.loo[model],? ? ? ? ? ? ? ?? ? ? ? ?delScore = score - min(score),? ? ? ? ? ? ? ?se_ose = se_ose[model],? ? ? ? ? ? ?? ? ? ? ?se_mod = se_mod[model]) %>% arrange(dim) %>%? mutate(index = 1:length(dim)) summaryTable @ %% Output \begin{Schunk} \begin{Sinput} ? summaryTable <- ? tibble(model = m.names, ? ? ? ? ?dim = m.dims[model],? ? ? ? ? ? ? ? ? ? ? ? ? ?score = m.loo[model],? ? ? ? ? ? ? ?? ? ? ? ? ?delScore = score - min(score),? ? ? ? ? ? ? ? ?se_ose = se_ose[model],? ? ? ? ? ? ?? ? ? ? ? ?se_mod = se_mod[model]) %>% arrange(dim) %>%? mutate(index = 1:length(dim)) ? summaryTable \end{Sinput} \begin{Soutput} # A tibble: 10 ? 7 ? ?model? ?dim score delScore se_ose se_mod index ? ?<chr> <int> <dbl>? ? <dbl>? <dbl>? <dbl> <int> ?1 zero? ? ? 2? 908.? ? 5.84? ? 40.1? ?4.14? ? ?1 ?2 d? ? ? ? ?3? 904.? ? 1.71? ? 40.6? ?2.52? ? ?2 ?3 q? ? ? ? ?3? 907.? ? 4.92? ? 40.2? ?3.80? ? ?3 ?4 qd? ? ? ? 4? 902.? ? 0? ? ? ?40.7? ?0? ? ? ? 4 ?5 qdi? ? ? ?5? 903.? ? 0.632? ?40.5? ?1.60? ? ?5 ?6 x? ? ? ? ?6? 908.? ? 5.58? ? 40.2? ?5.53? ? ?6 ?7 xq? ? ? ? 7? 907.? ? 4.81? ? 40.3? ?5.36? ? ?7 ?8 xd? ? ? ? 7? 905.? ? 2.96? ? 40.5? ?5.04? ? ?8 ?9 xqd? ? ? ?8? 903.? ? 0.908? ?40.5? ?4.52? ? ?9 10 xqdi? ? ? 9? 904.? ? 1.89? ? 40.4? ?4.70? ? 10 \end{Soutput} \end{Schunk} The problem is the output from tibble? # A tibble: 10 ? 7 the \times character is Unicode?U+00D7 or hex \xd7 and pdflatex lualatex etc fail where this occurs Is there a way of adding "sanitizing" code in the output before compiling? Or do I have to change it manually before compiling I do not want to switch to knitr.? Regards Duncan Mackay
Unicode chars
5 messages · Jeff Newmiller, Enrico Schumann, Richard O'Keefe +1 more
Are you aware that pdfLatex does not support Unicode? You need to use xeLatex. But I don't use Sweave, so I don't know how you go about making that choice.
On August 24, 2022 8:03:02 PM PDT, dulcalma dulcalma <dulcalma at bigpond.com> wrote:
Dear All I was trying the supplementary file?GS_main.R from https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.3475 I have tried to prevent latex compilation from failing using Sweave after trying all the online fixes I could find including using Rterm? I could fix it if it was in the input but not in the output? I am using R version 4.2 on windows 11 with 64 GB memory Sweave code \begin{small} <<r0>>= library(emdbook) # version 1.3.12 library(bbmle) # version 1.0.23.1 library(pbmcapply) # version 1.5.0? library(tidyverse) # version 1.3.0 library(ggpubr) # version 0.4.0 @ %% <<r7>>= summaryTable <- tibble(model = m.names, ? ? ? ?dim = m.dims[model],? ? ? ? ? ? ? ? ? ? ? ? ?score = m.loo[model],? ? ? ? ? ? ? ?? ? ? ? ?delScore = score - min(score),? ? ? ? ? ? ? ?se_ose = se_ose[model],? ? ? ? ? ? ?? ? ? ? ?se_mod = se_mod[model]) %>% arrange(dim) %>%? mutate(index = 1:length(dim)) summaryTable @ %% Output \begin{Schunk} \begin{Sinput} ? summaryTable <- ? tibble(model = m.names, ? ? ? ? ?dim = m.dims[model],? ? ? ? ? ? ? ? ? ? ? ? ? ?score = m.loo[model],? ? ? ? ? ? ? ?? ? ? ? ? ?delScore = score - min(score),? ? ? ? ? ? ? ? ?se_ose = se_ose[model],? ? ? ? ? ? ?? ? ? ? ? ?se_mod = se_mod[model]) %>% arrange(dim) %>%? mutate(index = 1:length(dim)) ? summaryTable \end{Sinput} \begin{Soutput} # A tibble: 10 ? 7 ? ?model? ?dim score delScore se_ose se_mod index ? ?<chr> <int> <dbl>? ? <dbl>? <dbl>? <dbl> <int> ?1 zero? ? ? 2? 908.? ? 5.84? ? 40.1? ?4.14? ? ?1 ?2 d? ? ? ? ?3? 904.? ? 1.71? ? 40.6? ?2.52? ? ?2 ?3 q? ? ? ? ?3? 907.? ? 4.92? ? 40.2? ?3.80? ? ?3 ?4 qd? ? ? ? 4? 902.? ? 0? ? ? ?40.7? ?0? ? ? ? 4 ?5 qdi? ? ? ?5? 903.? ? 0.632? ?40.5? ?1.60? ? ?5 ?6 x? ? ? ? ?6? 908.? ? 5.58? ? 40.2? ?5.53? ? ?6 ?7 xq? ? ? ? 7? 907.? ? 4.81? ? 40.3? ?5.36? ? ?7 ?8 xd? ? ? ? 7? 905.? ? 2.96? ? 40.5? ?5.04? ? ?8 ?9 xqd? ? ? ?8? 903.? ? 0.908? ?40.5? ?4.52? ? ?9 10 xqdi? ? ? 9? 904.? ? 1.89? ? 40.4? ?4.70? ? 10 \end{Soutput} \end{Schunk} The problem is the output from tibble? # A tibble: 10 ? 7 the \times character is Unicode?U+00D7 or hex \xd7 and pdflatex lualatex etc fail where this occurs Is there a way of adding "sanitizing" code in the output before compiling? Or do I have to change it manually before compiling I do not want to switch to knitr.? Regards Duncan Mackay [[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Sent from my phone. Please excuse my brevity.
On Thu, 25 Aug 2022, dulcalma dulcalma writes:
Dear All I was trying the supplementary file?GS_main.R from https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.3475 I have tried to prevent latex compilation from failing using Sweave after trying all the online fixes I could find including using Rterm? I could fix it if it was in the input but not in the output? I am using R version 4.2 on windows 11 with 64 GB memory Sweave code \begin{small} <<r0>>= library(emdbook) # version 1.3.12 library(bbmle) # version 1.0.23.1 library(pbmcapply) # version 1.5.0? library(tidyverse) # version 1.3.0 library(ggpubr) # version 0.4.0 @ %% <<r7>>= summaryTable <- tibble(model = m.names, ? ? ? ?dim = m.dims[model],? ? ? ? ? ? ? ? ? ? ? ? ?score = m.loo[model],? ? ? ? ? ? ? ?? ? ? ? ?delScore = score - min(score),? ? ? ? ? ? ? ?se_ose = se_ose[model],? ? ? ? ? ? ?? ? ? ? ?se_mod = se_mod[model]) %>% arrange(dim) %>%? mutate(index = 1:length(dim)) summaryTable @ %% Output \begin{Schunk} \begin{Sinput} ? summaryTable <- ? tibble(model = m.names, ? ? ? ? ?dim = m.dims[model],? ? ? ? ? ? ? ? ? ? ? ? ? ?score = m.loo[model],? ? ? ? ? ? ? ?? ? ? ? ? ?delScore = score - min(score),? ? ? ? ? ? ? ? ?se_ose = se_ose[model],? ? ? ? ? ? ?? ? ? ? ? ?se_mod = se_mod[model]) %>% arrange(dim) %>%? mutate(index = 1:length(dim)) ? summaryTable \end{Sinput} \begin{Soutput} # A tibble: 10 ? 7 ? ?model? ?dim score delScore se_ose se_mod index ? ?<chr> <int> <dbl>? ? <dbl>? <dbl>? <dbl> <int> ?1 zero? ? ? 2? 908.? ? 5.84? ? 40.1? ?4.14? ? ?1 ?2 d? ? ? ? ?3? 904.? ? 1.71? ? 40.6? ?2.52? ? ?2 ?3 q? ? ? ? ?3? 907.? ? 4.92? ? 40.2? ?3.80? ? ?3 ?4 qd? ? ? ? 4? 902.? ? 0? ? ? ?40.7? ?0? ? ? ? 4 ?5 qdi? ? ? ?5? 903.? ? 0.632? ?40.5? ?1.60? ? ?5 ?6 x? ? ? ? ?6? 908.? ? 5.58? ? 40.2? ?5.53? ? ?6 ?7 xq? ? ? ? 7? 907.? ? 4.81? ? 40.3? ?5.36? ? ?7 ?8 xd? ? ? ? 7? 905.? ? 2.96? ? 40.5? ?5.04? ? ?8 ?9 xqd? ? ? ?8? 903.? ? 0.908? ?40.5? ?4.52? ? ?9 10 xqdi? ? ? 9? 904.? ? 1.89? ? 40.4? ?4.70? ? 10 \end{Soutput} \end{Schunk} The problem is the output from tibble? # A tibble: 10 ? 7 the \times character is Unicode?U+00D7 or hex \xd7 and pdflatex lualatex etc fail where this occurs Is there a way of adding "sanitizing" code in the output before compiling? Or do I have to change it manually before compiling I do not want to switch to knitr.? Regards Duncan Mackay
You could try to automatically clean the code, by using
?iconv, say. But the results by not be satisfactory,
depending on what characters were used.
Sweave itself does not compile the LaTeX code. If you
run (in R)
Sweave(<filename.Rnw>, encoding = "utf8")
then it will produce the TeX file, which you can then
compile via LuaLaTeX or XeLaTeX [see
e.g. https://www.ctan.org/pkg/lualatex-doc].
For instance, on the command line, just say
lualatex <filename.tex>
or another programme (such as latexmk) that your TeX
distribution provides.
If this is a vignette, you can specify a Makefile, see
https://cran.r-project.org/doc/manuals/R-exts.html#Writing-package-vignettes
[[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Enrico Schumann Lucerne, Switzerland http://enricoschumann.net
PDFLaTeX does support Latin-1, and this is a Latin-1 character. On Thu, 25 Aug 2022 at 15:35, Jeff Newmiller <jdnewmil at dcn.davis.ca.us> wrote:
Are you aware that pdfLatex does not support Unicode? You need to use xeLatex. But I don't use Sweave, so I don't know how you go about making that choice. On August 24, 2022 8:03:02 PM PDT, dulcalma dulcalma <dulcalma at bigpond.com> wrote:
Dear All I was trying the supplementary file GS_main.R from https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.3475 I have tried to prevent latex compilation from failing using Sweave after trying all the online fixes I could find including using Rterm I could fix it if it was in the input but not in the output I am using R version 4.2 on windows 11 with 64 GB memory Sweave code \begin{small} <<r0>>= library(emdbook) # version 1.3.12 library(bbmle) # version 1.0.23.1 library(pbmcapply) # version 1.5.0 library(tidyverse) # version 1.3.0 library(ggpubr) # version 0.4.0 @ %% <<r7>>= summaryTable <- tibble(model = m.names, dim = m.dims[model], score = m.loo[model], delScore = score - min(score), se_ose = se_ose[model], se_mod = se_mod[model]) %>% arrange(dim) %>% mutate(index = 1:length(dim)) summaryTable @ %% Output \begin{Schunk} \begin{Sinput} summaryTable <- tibble(model = m.names, dim = m.dims[model], score = m.loo[model], delScore = score - min(score), se_ose = se_ose[model], se_mod = se_mod[model]) %>% arrange(dim) %>% mutate(index = 1:length(dim)) summaryTable \end{Sinput} \begin{Soutput} # A tibble: 10 ? 7 model dim score delScore se_ose se_mod index <chr> <int> <dbl> <dbl> <dbl> <dbl> <int> 1 zero 2 908. 5.84 40.1 4.14 1 2 d 3 904. 1.71 40.6 2.52 2 3 q 3 907. 4.92 40.2 3.80 3 4 qd 4 902. 0 40.7 0 4 5 qdi 5 903. 0.632 40.5 1.60 5 6 x 6 908. 5.58 40.2 5.53 6 7 xq 7 907. 4.81 40.3 5.36 7 8 xd 7 905. 2.96 40.5 5.04 8 9 xqd 8 903. 0.908 40.5 4.52 9 10 xqdi 9 904. 1.89 40.4 4.70 10 \end{Soutput} \end{Schunk} The problem is the output from tibble # A tibble: 10 ? 7 the \times character is Unicode U+00D7 or hex \xd7 and pdflatex lualatex etc fail where this occurs Is there a way of adding "sanitizing" code in the output before compiling Or do I have to change it manually before compiling I do not want to switch to knitr. Regards Duncan Mackay [[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Sent from my phone. Please excuse my brevity. ______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Thank you for the reply I tried xeLatex at least once and possibly twice and it failed to compile I now tried it again and found that I had missed the inputenc error when I tried before. After removing the line it now compiles. Thank you Regards Duncan ------ Original Message ------ From: "Jeff Newmiller" <jdnewmil at dcn.davis.ca.us> To: r-help at r-project.org; "dulcalma dulcalma" <dulcalma at bigpond.com>; r-help at R-project.org Sent: Thursday, 25 Aug, 2022 At 1:25 PM Subject: Re: [R] Unicode chars Are you aware that pdfLatex does not support Unicode? You need to use xeLatex. But I don't use Sweave, so I don't know how you go about making that choice. On August 24, 2022 8:03:02 PM PDT, dulcalma dulcalma
<dulcalma at bigpond.com> wrote:
Dear All I was trying the supplementary file?GS_main.R from https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.3475 I have tried to prevent latex compilation from failing using Sweave after trying all the online fixes I could find including using Rterm? I could fix it if it was in the input but not in the output? I am using R version 4.2 on windows 11 with 64 GB memory Sweave code \begin{small} <<r0>>= library(emdbook) # version 1.3.12 library(bbmle) # version 1.0.23.1 library(pbmcapply) # version 1.5.0? library(tidyverse) # version 1.3.0 library(ggpubr) # version 0.4.0 @ %% <<r7>>= summaryTable <- tibble(model = m.names, ? ? ? ?dim = m.dims[model],? ? ? ? ? ? ? ? ? ? ? ? ?score = m.loo[model],? ? ? ? ? ? ? ?? ? ? ? ?delScore = score - min(score),? ? ? ? ? ? ? ?se_ose = se_ose[model],? ? ? ? ? ? ?? ? ? ? ?se_mod = se_mod[model]) %>% arrange(dim) %>%? mutate(index = 1:length(dim)) summaryTable @ %% Output \begin{Schunk} \begin{Sinput} ? summaryTable <- ? tibble(model = m.names, ? ? ? ? ?dim = m.dims[model],? ? ? ? ? ? ? ? ? ? ? ? ? ?score = m.loo[model],? ? ? ? ? ? ? ?? ? ? ? ? ?delScore = score - min(score),? ? ? ? ? ? ? ? ?se_ose = se_ose[model],? ? ? ? ? ? ?? ? ? ? ? ?se_mod = se_mod[model]) %>% arrange(dim) %>%? mutate(index = 1:length(dim)) ? summaryTable \end{Sinput} \begin{Soutput} # A tibble: 10 ? 7 ? ?model? ?dim score delScore se_ose se_mod index ? ?<chr> <int> <dbl>? ? <dbl>? <dbl>? <dbl> <int> ?1 zero? ? ? 2? 908.? ? 5.84? ? 40.1? ?4.14? ? ?1 ?2 d? ? ? ? ?3? 904.? ? 1.71? ? 40.6? ?2.52? ? ?2 ?3 q? ? ? ? ?3? 907.? ? 4.92? ? 40.2? ?3.80? ? ?3 ?4 qd? ? ? ? 4? 902.? ? 0? ? ? ?40.7? ?0? ? ? ? 4 ?5 qdi? ? ? ?5? 903.? ? 0.632? ?40.5? ?1.60? ? ?5 ?6 x? ? ? ? ?6? 908.? ? 5.58? ? 40.2? ?5.53? ? ?6 ?7 xq? ? ? ? 7? 907.? ? 4.81? ? 40.3? ?5.36? ? ?7 ?8 xd? ? ? ? 7? 905.? ? 2.96? ? 40.5? ?5.04? ? ?8 ?9 xqd? ? ? ?8? 903.? ? 0.908? ?40.5? ?4.52? ? ?9 10 xqdi? ? ? 9? 904.? ? 1.89? ? 40.4? ?4.70? ? 10 \end{Soutput} \end{Schunk} The problem is the output from tibble? # A tibble: 10 ? 7 the \times character is Unicode?U+00D7 or hex \xd7 and pdflatex lualatex etc fail where this occurs Is there a way of adding "sanitizing" code in the output before compiling? Or do I have to change it manually before compiling I do not want to switch to knitr.? Regards Duncan Mackay [[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Sent from my phone. Please excuse my brevity.