Quantil-quantile plot help

Dear Laura,

I am using the qq.plot command to create quantile-quantile plots. The plot
should display a 45 degree reference line upon which the points of the graph
should fall if the two distributions being examined are roughly equal.

If I try:
x<-rchisq(100, df=6)
qq.plot(x, dist="chisq", df=6)

Then I get a quantile plot which has an intercept of roughly 1 when the line
should be going through (0,0)?

Could someone explain why this is happening on this plot and how I can get
what I need?

I guess that you're using qq.plot in the car package. As the help file 
explains, the line is fit by default through the quartiles of the two 
distributions, and there is an option to fit by robust regression. The 
general idea is that the data could come from the reference distribution 
but possibly with a different location and scale, and hence the line need 
not have an intercept of 0 and a slope of 1.

You could add the 45-degree line with abline(0,1), but there is no way at 
present of suppressing the line that qq.plot draws (short of rewriting 
qq.plot.default). I'll add an option to suppress the line when I next 
update the package.

Regards,
  John

-----------------------------------------------------
John Fox
Department of Sociology
McMaster University
Hamilton, Ontario, Canada L8S 4M4
email: jfox at mcmaster.ca
phone: 905-525-9140x23604
web: www.socsci.mcmaster.ca/jfox
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