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Error using nlme; Malformed factors

2 messages · Wong Yoke Yong, Bert Gunter

Original
Wong Yoke Yong
# 
HI all,

I am using the nlme package to learn multilevel models, and following
examples from the textbook "Discovering Statistics Using R" when it
happened.

[Mixed Models Code][1]

The data set is Honeymoon Period.dat, also downloadable under their
companion website.

[Data Set - Multilevel Models][2]

    require(nlme)
    require(reshape2)
    satisfactionData = read.delim("Honeymoon Period.dat",  header = TRUE)

    restructuredData<-melt(satisfactionData, id = c("Person", "Gender"),
measured = c("Satisfaction_Base", "Satisfaction_6_Months",
"Satisfaction_12_Months", "Satisfaction_18_Months"))
    names(restructuredData)<-c("Person", "Gender", "Time",
"Life_Satisfaction")


    #print(restructuredData)
    #restructuredData.sorted<-restructuredData[order(Person),]

    intercept <-gls(Life_Satisfaction~1, data = restructuredData, method =
"ML", na.action = na.exclude)
    randomIntercept <-lme(Life_Satisfaction ~1, data = restructuredData,
random = ~1|Person, method = "ML",  na.action = na.exclude, control =
list(opt="optim"))
    anova(intercept, randomIntercept)

    timeRI<-update(randomIntercept, .~. + Time)
    timeRS<-update(timeRI, random = ~Time|Person)
    ARModel<-update(timeRS, correlation = corAR1(0, form = ~Time|Person))

The error occured at this moment, when I am trying to update "timeRS"
model. The error is as follows:

    Error in as.character.factor(X[[i]], ...) : malformed factor

Help would be appreciated. Thanks!

  [1]:
https://studysites.uk.sagepub.com/dsur/study/DSUR%20R%20Script%20Files/Chapter%2019%20DSUR%20Mixed%20Models.R
  [2]: https://studysites.uk.sagepub.com/dsur/study/articles.htm


Regards,
Yoke Yong
Bert Gunter
# 
You may do better (faster, more knowledgeable responses) posting on
the r-sig-mixed-models list.

-- Bert


Bert Gunter

"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Tue, Dec 20, 2016 at 6:24 PM, Wong Yoke Yong <yokeyong.wong at gmail.com> wrote: