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Query Gene ontology
3 messages · LEMAITRE Hervé Université Paris Sud, David Winsemius, Ben Bolker
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David On May 18, 2011, at 5:14 AM, LEMAITRE Herv? Universit? Paris Sud wrote: > Dear R-users, > > > > I'm looking for a way to query the gene ontology in R like in the GO > browser (AmiGO). I tried different packages (NCBI2R, GOsim ...) but > I did not find the way to extract genes names associated to a GO > term. Could you tell me if there is a way to do that? > > David Winsemius, MD Heritage Laboratories West Hartford, CT
LEMAITRE Herv? Universit? Paris Sud <herve.lemaitre <at> cea.fr> writes:
I'm looking for a way to query the gene ontology in R like in the GO browser (AmiGO). I tried different packages (NCBI2R, GOsim ...) but I did not find the way to extract genes names associated to a GO term. Could you tell me if there is a way to do that?
You will probably have better luck posting this question on the bioconductor mailing list (read the posting guide, and search the list archives, first ...) Ben Bolker