Hi R users: I want to know any experience compiling R in other LINUX distributions besides FEDORA (Red Hat) or Mandrake, for example in BSD, Debian, Gentoo, Slackware, vector LINUX, Knoppix, Yopper or CERN linux? Hope this is not a "basic question" Thank you for your help. Kenneth
A basic question
4 messages · Kenneth Cabrera, Douglas Bates, Peter Dalgaard +1 more
Kenneth wrote:
I want to know any experience compiling R in other LINUX distributions besides FEDORA (Red Hat) or Mandrake, for example in BSD, Debian, Gentoo, Slackware, vector LINUX, Knoppix, Yopper or CERN linux? Hope this is not a "basic question" Thank you for your help.
There is considerable experience compiling R under Debian Linux. Many of the developers use Debian and if you check the sources you will find that there is a debian directory in the official source distribution. The daily package checking is done on a system running Debian and there are dozens of R packages in the Debian distribution. See http://packages.qa.debian.org/r/r-base-core for a history of the uploads. The link to the buildd logs shows compilation of R under Debian on many different architectures. Because Knoppix is derived from Debian and uses the Debian packaging system the compilation of R under Knoppix is essentially the same as under Debian. The Quantian distribution comes with R installed.
Kenneth <krcabrer at epm.net.co> writes:
Hi R users: I want to know any experience compiling R in other LINUX distributions besides FEDORA (Red Hat) or Mandrake, for example in BSD, Debian, Gentoo, Slackware, vector LINUX, Knoppix, Yopper or CERN linux? Hope this is not a "basic question"
BSD is not Linux... I'm fairly sure we have people checking BSD (perhaps even on the core team. Ross?), and also SuSE and Gentoo. We definitely have core members using Debian, and Knoppix is just a Debian variant (see also Quantian). CERN Linux is a RedHat variant. Don't know about Yoper, Slackware, and vector Linux (a Slackware derivative), but building frome source is not generally a problem on Linux.
O__ ---- Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907
On Tue, 2004-11-30 at 13:58, Kenneth wrote:
Hi R users: I want to know any experience compiling R in other LINUX distributions besides FEDORA (Red Hat) or Mandrake, for example in BSD, Debian, Gentoo, Slackware, vector LINUX, Knoppix, Yopper or CERN linux? Hope this is not a "basic question" Thank you for your help.
I assume that the following will typically work: Get the source file, gunzip and untar, cd to the created directory and type: ./configure make sudo make install It is best to check the resulting configuration after ./configure and get the software (compilers, libraries, packages, utilities) you need for the missing functionality you want to have. It is also wise to run 'make check' after 'make' so that you see if you can trust your compilation. This make check fails in some cases: at least standard package 'foreign' failed 'make check' in ppc architecture both in Red Hat/Fedora based (Yellowdog) and Debian based (Ubuntu) Linuxes when I tried last time. Otherwise the compilation seems to run smoothly (and you may not need 'foreign'). BSD is not Linux, but R is officially supported at least for one version of BSD with GNU tools: MacOS X. cheers,jari oksanen
Jari Oksanen <jarioksa at sun3.oulu.fi>