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Variability Plot For Toray Microarray Data
3 messages · Peverall Dubois, Bert Gunter, Jim Lemon
Wrong list! You want Bioconductor. -- Bert On Mon, Jan 28, 2013 at 2:42 AM, Peverall Dubois
<peveralldubois at gmail.com> wrote:
Is there any package that allow you to perform "MA plot" like graph
for Toray microarray data?
Unlike Affymetrix CEL file which contain 2 values (R and G),
Torray raw data only contain 1 value.
MA-plot is Affymetrix specific which usually available for in (limma)
package.
P. Dubois
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Bert Gunter Genentech Nonclinical Biostatistics Internal Contact Info: Phone: 467-7374 Website: http://pharmadevelopment.roche.com/index/pdb/pdb-functional-groups/pdb-biostatistics/pdb-ncb-home.htm
On 01/28/2013 09:42 PM, Peverall Dubois wrote:
Is there any package that allow you to perform "MA plot" like graph for Toray microarray data? Unlike Affymetrix CEL file which contain 2 values (R and G), Torray raw data only contain 1 value. MA-plot is Affymetrix specific which usually available for in (limma) package.
Hi Peverall, Have a look at "plotMA" in the limma package. Jim