Dan, It is hard to say without being able to reproduce your example. If you send me the data I could try to advise something. Roger url: www.econ.uiuc.edu/~roger Roger Koenker email rkoenker at uiuc.edu Department of Economics vox: 217-333-4558 University of Illinois fax: 217-244-6678 Urbana, IL 61801
On Feb 13, 2012, at 7:50 AM, Dan Morovitz wrote:
Hi,
I'm attempting to calculate the 0.25 and 0.97 quantiles for tree height (0-50 meters) against tree age (0-300 years) and I am running into some difficulty with the plotted grafic. I've run the examples in the quantreg help and can get those to work properly and by plugging in my data I can also get the lines plotted on my dataset. Unfortunately I'm running into a problem with the median and other regression lines with tree age younger than 50 years, basically the median is in this range overestimated and even comes out of the rage of oberservations. here is the code I'm using.
# then fit the median using nlrq
spruce.nlrq <- nlrq(height ~ SSlogis(age, Asym, mid, scal),data=spruce, tau=0.5, trace=TRUE)
lines(1:200, predict(spruce.nlrq, newdata=list(age=1:200)), col="2")
I believe this has something to do with the SSlogis, as this gives the parameters for an S curve. My data set does not have the typical S curve shape, instead you could image it as starting at the inflection point of an S curve. This is what I expect the .025 quantile to be similar to:
x <- seq(1,100,1)
plot(log(x))
the 0,975 should also have a logarithmic shape but no such a steep incline. Ive tried using different self starting models as found under:
apropos("^ss")
however I have not gotten them to work, or at least to fix the problem. Curves similar to mine look like these site index curves:
http://www.extension.umn.edu/distribution/naturalresources/components/3473-13.html
In the example from the nlrq help the lines of the median and the various quantiles all start from the same location, tha is basically (x=0, y=0) in the coodinate plane. With my problem, the lines start to be drawn from various different positions ( the lines always start at age(x)=0, but the height(y) can range between 0 and 15).
Additionally, the data set is quite large. with about 50,000 oberservations on age and height.
Does anyone have a suggestion on how to fix this problem?
Thanks in advance
Dan
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