Dear Senior users of R/R Studio, I am very new to this environment hence am unable to plot the SEM models including use of graphic package ggplot. Request for some help in getting the plots please. Thanks, ----- Deva
Lavaan
6 messages · DzR, Sarah Goslee, David Barron +2 more
Hi, There are various tutorials for lavaan online, and even an entire book on the R package. Have you worked through those examples and tutorials successfully? If so, a clearer description of what you've tried and what failed is required to be able to help you. Without a reproducible example that includes some sample data (fake is fine), the code you used, and some clear idea of what output you expect, it's impossible to figure out how to help you. Here are some suggestions for creating a good reproducible example: http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example Sarah
On Tue, Jun 23, 2015 at 10:48 AM, DzR <devazresearch at gmail.com> wrote:
Dear Senior users of R/R Studio, I am very new to this environment hence am unable to plot the SEM models including use of graphic package ggplot. Request for some help in getting the plots please. Thanks, ----- Deva
Sarah Goslee http://www.functionaldiversity.org
i am attaching a .csv file, and the associated code worked out in R Studio.
i used the lavaan and sem packages, and conducted it.
now, i wish to draw the SEM model, as is available in AMOS other packages
and how does one draw the covariance arrows in R.
ONE STATISTICS oriented question - how can one provide interpretation for
negative coefficients.
kindly guide.
thanks and regds,
taxliability <- read.csv("~/R WORK SPACE/taxliability.csv")
View(taxliability) model <-'tax~ inc + exp + svg + inv' fit <- sem(model, data = taxliability)
Error: could not find function "sem"
library("lavaan", lib.loc="~/R/win-library/3.2")
This is lavaan 0.5-18 lavaan is BETA software! Please report any bugs.
fit <- sem(model, data = taxliability)
Warning message: In lav_model_vcov(lavmodel = lavmodel, lavsamplestats = lavsamplestats, : lavaan WARNING: could not compute standard errors! lavaan NOTE: this may be a symptom that the model is not identified.
library("sem", lib.loc="~/R/win-library/3.2")
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called ?htmlwidgets? Error: package or namespace load failed for ?sem?
fit <- sem(model, data = taxliability)
Warning message: In lav_model_vcov(lavmodel = lavmodel, lavsamplestats = lavsamplestats, : lavaan WARNING: could not compute standard errors! lavaan NOTE: this may be a symptom that the model is not identified.
summary(fit,rsq=T, fit.measures=TRUE)
lavaan (0.5-18) converged normally after 1 iterations
Number of observations 66
Estimator ML
Minimum Function Test Statistic 0.000
Degrees of freedom 0
Model test baseline model:
Minimum Function Test Statistic 160.444
Degrees of freedom 4
P-value 0.000
User model versus baseline model:
Comparative Fit Index (CFI) 1.000
Tucker-Lewis Index (TLI) 1.000
Loglikelihood and Information Criteria:
Loglikelihood user model (H0) -3441.453
Loglikelihood unrestricted model (H1) -3441.453
Number of free parameters 5
Akaike (AIC) 6892.905
Bayesian (BIC) 6903.854
Sample-size adjusted Bayesian (BIC) 6888.113
Root Mean Square Error of Approximation:
RMSEA 0.000
90 Percent Confidence Interval 0.000 0.000
P-value RMSEA <= 0.05 1.000
Standardized Root Mean Square Residual:
SRMR 0.000
Parameter estimates:
Information Expected
Standard Errors Standard
Estimate Std.err Z-value P(>|z|)
Regressions:
tax ~
inc 0.103
exp -0.023
svg -0.073
inv 0.222
Variances:
tax 4662558.169
R-Square:
tax 0.912
semPlot
Error: object 'semPlot' not found
library("semPlot", lib.loc="~/R/win-library/3.2")
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called ?htmlwidgets? Error: package or namespace load failed for ?semPlot?
semPlot::
Error: unexpected end of line in "semPlot::"
*....* *Deva* ............... *in search of knowledge, everyday something is added ....* *in search of wisdom, everyday something is dropped ... an old Chinese Proverb* ::::::::::::::::::::::::: On Tue, Jun 23, 2015 at 9:03 PM, Sarah Goslee <sarah.goslee at gmail.com> wrote:
Hi, There are various tutorials for lavaan online, and even an entire book on the R package. Have you worked through those examples and tutorials successfully? If so, a clearer description of what you've tried and what failed is required to be able to help you. Without a reproducible example that includes some sample data (fake is fine), the code you used, and some clear idea of what output you expect, it's impossible to figure out how to help you. Here are some suggestions for creating a good reproducible example: http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example Sarah On Tue, Jun 23, 2015 at 10:48 AM, DzR <devazresearch at gmail.com> wrote:
Dear Senior users of R/R Studio, I am very new to this environment hence am unable to plot the SEM models
including use of graphic package ggplot.
Request for some help in getting the plots please. Thanks, ----- Deva
-- Sarah Goslee http://www.functionaldiversity.org
Does the package semPlot not do what you want? I notice that you got an error when you used library(semPlot) because you don't have all the dependencies installed. When you have semPlot working, it should be able to produce a graphical output of the results, including 'covariance arrows'. David
On 23 June 2015 at 17:47, deva d <devazresearch at gmail.com> wrote:
i am attaching a .csv file, and the associated code worked out in R Studio.
i used the lavaan and sem packages, and conducted it.
now, i wish to draw the SEM model, as is available in AMOS other packages
and how does one draw the covariance arrows in R.
ONE STATISTICS oriented question - how can one provide interpretation for
negative coefficients.
kindly guide.
thanks and regds,
taxliability <- read.csv("~/R WORK SPACE/taxliability.csv")
View(taxliability) model <-'tax~ inc + exp + svg + inv' fit <- sem(model, data = taxliability)
Error: could not find function "sem"
library("lavaan", lib.loc="~/R/win-library/3.2")
This is lavaan 0.5-18 lavaan is BETA software! Please report any bugs.
fit <- sem(model, data = taxliability)
Warning message: In lav_model_vcov(lavmodel = lavmodel, lavsamplestats = lavsamplestats, : lavaan WARNING: could not compute standard errors! lavaan NOTE: this may be a symptom that the model is not identified.
library("sem", lib.loc="~/R/win-library/3.2")
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called ?htmlwidgets? Error: package or namespace load failed for ?sem?
fit <- sem(model, data = taxliability)
Warning message: In lav_model_vcov(lavmodel = lavmodel, lavsamplestats = lavsamplestats, : lavaan WARNING: could not compute standard errors! lavaan NOTE: this may be a symptom that the model is not identified.
summary(fit,rsq=T, fit.measures=TRUE)
lavaan (0.5-18) converged normally after 1 iterations
Number of observations 66
Estimator ML
Minimum Function Test Statistic 0.000
Degrees of freedom 0
Model test baseline model:
Minimum Function Test Statistic 160.444
Degrees of freedom 4
P-value 0.000
User model versus baseline model:
Comparative Fit Index (CFI) 1.000
Tucker-Lewis Index (TLI) 1.000
Loglikelihood and Information Criteria:
Loglikelihood user model (H0) -3441.453
Loglikelihood unrestricted model (H1) -3441.453
Number of free parameters 5
Akaike (AIC) 6892.905
Bayesian (BIC) 6903.854
Sample-size adjusted Bayesian (BIC) 6888.113
Root Mean Square Error of Approximation:
RMSEA 0.000
90 Percent Confidence Interval 0.000 0.000
P-value RMSEA <= 0.05 1.000
Standardized Root Mean Square Residual:
SRMR 0.000
Parameter estimates:
Information Expected
Standard Errors Standard
Estimate Std.err Z-value P(>|z|)
Regressions:
tax ~
inc 0.103
exp -0.023
svg -0.073
inv 0.222
Variances:
tax 4662558.169
R-Square:
tax 0.912
semPlot
Error: object 'semPlot' not found
library("semPlot", lib.loc="~/R/win-library/3.2")
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called ?htmlwidgets? Error: package or namespace load failed for ?semPlot?
semPlot::
Error: unexpected end of line in "semPlot::"
*....* *Deva* ............... *in search of knowledge, everyday something is added ....* *in search of wisdom, everyday something is dropped ... an old Chinese Proverb* ::::::::::::::::::::::::: On Tue, Jun 23, 2015 at 9:03 PM, Sarah Goslee <sarah.goslee at gmail.com> wrote:
Hi, There are various tutorials for lavaan online, and even an entire book on the R package. Have you worked through those examples and tutorials successfully? If so, a clearer description of what you've tried and what failed is required to be able to help you. Without a reproducible example that includes some sample data (fake is fine), the code you used, and some clear idea of what output you expect, it's impossible to figure out how to help you. Here are some suggestions for creating a good reproducible example: http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example Sarah On Tue, Jun 23, 2015 at 10:48 AM, DzR <devazresearch at gmail.com> wrote:
Dear Senior users of R/R Studio, I am very new to this environment hence am unable to plot the SEM models
including use of graphic package ggplot.
Request for some help in getting the plots please. Thanks, ----- Deva
-- Sarah Goslee http://www.functionaldiversity.org
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Have you considered using the semPlot package? It works nicely with lavaan models (among other sem packages). There is also the DiagrammeR package. Rick
On 06/23/2015 10:48 AM, DzR wrote:
Dear Senior users of R/R Studio, I am very new to this environment hence am unable to plot the SEM models including use of graphic package ggplot. Request for some help in getting the plots please. Thanks, ----- Deva
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Richard A. Bilonick, PhD Assistant Professor Dept. of Ophthalmology, School of Medicine Dept. of Biostatistics, Graduate School of Public Health Dept. of Orthodontics, School of Dental Medicine University of Pittsburgh Principal Investigator for the Pittsburgh Aerosol Research and Inhalation Epidemiology Study (PARIES) 412 647 5756
i tried the semPlot but it flopped. various other packages also did not perform. i will try the DiagrammeR package and revert. meanwhile, i tried going to the onyx package and its neat, though i have yet to spend some time on it to familiarise myself with the nuts and bolts of the process. *....* *Deva* *F-13* *iResearch at NITIE* *my 'research engine' * ............... *in search of knowledge, everyday something is added ....* *in search of wisdom, everyday something is dropped ... an old Chinese Proverb* :::::::::::::::::::::::::
On Wed, Jun 24, 2015 at 6:32 PM, Rick Bilonick <rab45 at pitt.edu> wrote:
Have you considered using the semPlot package? It works nicely with lavaan models (among other sem packages). There is also the DiagrammeR package. Rick On 06/23/2015 10:48 AM, DzR wrote:
Dear Senior users of R/R Studio, I am very new to this environment hence am unable to plot the SEM models including use of graphic package ggplot. Request for some help in getting the plots please. Thanks, ----- Deva
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
-- Richard A. Bilonick, PhD Assistant Professor Dept. of Ophthalmology, School of Medicine Dept. of Biostatistics, Graduate School of Public Health Dept. of Orthodontics, School of Dental Medicine University of Pittsburgh Principal Investigator for the Pittsburgh Aerosol Research and Inhalation Epidemiology Study (PARIES) 412 647 5756
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.