I need help on calling the svydesign function in the survey package
(although this error appears not to be specific to svydesign). I am
passing parameters incorrectly but am not sure how to correct the
problem.
## Call the main function PS.sim (one of mine). The dots are
parameters I omitted to simplify the question.
## y.col, str.col, clus.id, and PS.col are names of columns in the
object pop.
PS.sim(pop=small, y.col="NOTCOV",
...,str.col="new.str", clus.id="new.psu",
PS.col="PS.var", ...)
## A data.frame called sam.dat is generated by PS.sim. Its first 3
lines are:
ID new.str PS.var new.psu NOTCOV wts
213 1 3 2 2 37.7
236 1 3 2 2 37.7
286 1 2 2 2 37.7
## Next, try to generate a survey design object.
## This fails (note the use of the calling parms clus.id and str.col):
svydesign(id = ~clus.id, strata = ~str.col, weights = wts,
data = sam.dat, nest = TRUE)
## with this error:
Error in model.frame(formula, rownames, variables, varnames, extras,
extranames, :
invalid variable type
## It looks like clus.id is substituted as "new.psu", likewise for
str.col
## The call below works when I use the actual column names not the
calling parms:
svydesign(id = ~new.psu, strata = ~new.str, weights = wts,data =
sam.dat, nest = TRUE)
I need to call svydesign with the parms I use to invoke the main
function PS.sim, i.e., ~clus.id and ~str.col.
How do I do that?
Thanks,
Richard
calling svydesign function that uses model.frame
2 messages · Richard Valliant, Thomas Lumley
On Mon, 11 Apr 2005, Richard Valliant wrote:
I need help on calling the svydesign function in the survey package (although this error appears not to be specific to svydesign). I am passing parameters incorrectly but am not sure how to correct the problem. ## Call the main function PS.sim (one of mine). The dots are parameters I omitted to simplify the question. ## y.col, str.col, clus.id, and PS.col are names of columns in the object pop. PS.sim(pop=small, y.col="NOTCOV", ...,str.col="new.str", clus.id="new.psu", PS.col="PS.var", ...) ## A data.frame called sam.dat is generated by PS.sim. Its first 3 lines are: ID new.str PS.var new.psu NOTCOV wts 213 1 3 2 2 37.7 236 1 3 2 2 37.7 286 1 2 2 2 37.7
<snip>
I need to call svydesign with the parms I use to invoke the main function PS.sim, i.e., ~clus.id and ~str.col. How do I do that?
Two possibilities
1/ construct a formula with as.formula and paste
svydesign(id=as.formula(paste("~",new.psu)), strata=as.formula(paste("~",str.col)),...)
For a working example
data(api)
psu<-"dnum"
svydesign(id=as.formula(paste("~",psu)), weight=~pw,data=apiclus1)
1 - level Cluster Sampling design
With (15) clusters.
svydesign(id = as.formula(paste("~", psu)), weight = ~pw, data = apiclus1)
2/ use substitute()
A working example:
psu<-"dnum" eval(substitute(svydesign(id=~id,weight=~pw, data=apiclus1),
list(id=as.name(psu)))) 1 - level Cluster Sampling design With (15) clusters. svydesign(id = ~dnum, weight = ~pw, data = apiclus1) As you can see, the second option is probably more cumbersome but has the advantage of producing a prettier-looking call. -thomas