**Always post back to the list**, which I have cc'ed, not just to me. There is obviously some problem in your data files. As I have no idea what their structure is or should be, I have no clue. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Tue, Mar 1, 2016 at 8:02 AM, Tara Jane Pirie
<T.J.Pirie at pgr.reading.ac.uk> wrote:
Hi Burt,
Here are part of the data, I still get a miss-match but only 1 this time however I have checked it and there is a "1" on that day.
str(capture)
'data.frame': 78 obs. of 3 variables:
$ LOC_ID : int 11 5 1 11 11 11 11 20 11 11 ...
$ ANIMAL_ID: int 7 2 1 1 1 6 7 6 1 7 ...
$ SO : int 1 5 6 6 7 7 8 10 16 18 ...
str(traps)
'data.frame': 40 obs. of 94 variables:
$ LOC_ID : int 1 5 6 53 7 8 9 12 16 18 ...
$ X_Coord: int 230042 229616 231090 230924 232578
$ Y_Coord: int 7236722 7235124 7234627 7237063 7234297
$ X1 : int 1 1 1 1 1 1 1 1 1 1 ...
$ X2 : int 1 1 1 1 1 1 1 1 1 1 ...
$ X3 : int 1 1 1 1 1 1 1 1 1 1 ...
$ X4 : int 1 1 1 1 1 1 1 1 1 1 ...
<Tcl>
Error - mismatch in animal capture details and trap deployment details files : location id
29 not deployed on SO 22
Error in if (locso[loc, so + 3] == 0) { :
missing value where TRUE/FALSE needed
Error - mismatch in animal capture details and trap deployment details files : location id
29 not deployed on SO 22
Error in if (locso[loc, so + 3] == 0) { :
missing value where TRUE/FALSE needed
Kind regards
Tara Pirie
Doctoral researcher - University of Reading
People and Wildlife Research group
Tel: +44 (0) 7340967711
________________________________________
From: Bert Gunter <bgunter.4567 at gmail.com>
Sent: 29 February 2016 17:26
To: Tara Jane Pirie
Cc: r-help at r-project.org
Subject: Re: [R] Help with SpaceCAP
The email server for this list filters out most attachments, including yours.
.txt attachments are generally permitted. As you seem to have
successfully read the files into R, use dput() to include (a small
portion if the data are numerous) of the data in your email. Before
doing so, however, examine your data frame with str().
?dput
?str
Cheers,
Bert
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Mon, Feb 29, 2016 at 5:08 AM, Tara Jane Pirie
<T.J.Pirie at pgr.reading.ac.uk> wrote:
Hi there,
I am trying to load csv files into the spacecap program in R, but I keep getting either or both of the following error messages:
Error - mismatch in animal capture details and trap deployment details files : location id 29
not deployed on SO 22
Error in if (locso[loc, so + 3] == 0) { :
missing value where TRUE/FALSE needed
I have checked the headings and only have 3 columns for the capture file and have double checked the trap locs. I have checked the working days for the flagged trap locations, but they are showing "1".
Please can you help me understand why I am getting these messages. I have attached the files I have been trying to upload.
Kind regards
Tara Pirie
Doctoral researcher - University of Reading
People and Wildlife Research group
Tel: +44 (0) 7340967711
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