You could use <<eval=FALSE>>= and the code inside the chunk will not be evaluated. I suppose two other options could be to comment out the bad code inside the code chunk or to use verbatim to make it look like a code chunk in your output.
-----Original Message-----
From: r-help-bounces at stat.math.ethz.ch [mailto:r-help-bounces at stat.math.ethz.ch] On Behalf Of Vincent Goulet
Sent: Wednesday, September 07, 2005 11:44 AM
To: r-help at stat.math.ethz.ch
Subject: [R] Avoid Sweave from stopping on errors
Hi all,
Is there an option in Sweave to avoid it from stopping on a code chunk with an error? (I purposefully want to include code with an error in class notes.)
I suspect the answer is "no" and that I will be pointed to options("error").
That'd be fine, but which error parameter will just "do nothing" in case of an error?
Thanks in advance!
--
Vincent Goulet, Associate Professor
??cole d'actuariat
Universit?? Laval, Qu??bec
Vincent.Goulet at act.ulaval.ca http://vgoulet.act.ulaval.ca
______________________________________________
R-help at stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Avoid Sweave from stopping on errors
3 messages · Doran, Harold, Douglas Bates, Roger Bivand
On 9/7/05, Doran, Harold <HDoran at air.org> wrote:
You could use <<eval=FALSE>>= and the code inside the chunk will not be evaluated. I suppose two other options could be to comment out the bad code inside the code chunk or to use verbatim to make it look like a code chunk in your output.
-----Original Message-----
From: r-help-bounces at stat.math.ethz.ch [mailto:r-help-bounces at stat.math.ethz.ch] On Behalf Of Vincent Goulet
Sent: Wednesday, September 07, 2005 11:44 AM
To: r-help at stat.math.ethz.ch
Subject: [R] Avoid Sweave from stopping on errors
Hi all,
Is there an option in Sweave to avoid it from stopping on a code chunk with an error? (I purposefully want to include code with an error in class notes.)
I suspect the answer is "no" and that I will be pointed to options("error").
That'd be fine, but which error parameter will just "do nothing" in case of an error?
Thanks in advance!
Another option is to wrap the call that will produce an error in try(). You still get the error report, etc. but execution does not stop.
On Wed, 7 Sep 2005, Douglas Bates wrote:
On 9/7/05, Doran, Harold <HDoran at air.org> wrote:
You could use <<eval=FALSE>>= and the code inside the chunk will not
be evaluated. I suppose two other options could be to comment out the
bad code inside the code chunk or to use verbatim to make it look like
a code chunk in your output.
-----Original Message-----
From: r-help-bounces at stat.math.ethz.ch [mailto:r-help-bounces at stat.math.ethz.ch] On Behalf Of Vincent Goulet
Sent: Wednesday, September 07, 2005 11:44 AM
To: r-help at stat.math.ethz.ch
Subject: [R] Avoid Sweave from stopping on errors
Hi all,
Is there an option in Sweave to avoid it from stopping on a code chunk
with an error? (I purposefully want to include code with an error in
class notes.)
I suspect the answer is "no" and that I will be pointed to
options("error"). That'd be fine, but which error parameter will just
"do nothing" in case of an error?
Thanks in advance!
Another option is to wrap the call that will produce an error in try(). You still get the error report, etc. but execution does not stop.
This works very nicely for the original purposes, as the try() can be hidden and the command in error echoed: <<echo=TRUE,eval=TRUE>>= y <- rnorm(10) is.na(y) <- 1 y @ <<echo=TRUE,eval=FALSE>>= lm(y ~ 1, na.action=na.fail) @ <<echo=FALSE,eval=TRUE,results=verbatim>>= try_out <- try(lm(y ~ 1, na.action=na.fail)) cat(try_out) @ looks in output as it should, with the error message set after the command that provoked it. Sweave is a remarkable tool.
Roger Bivand Economic Geography Section, Department of Economics, Norwegian School of Economics and Business Administration, Helleveien 30, N-5045 Bergen, Norway. voice: +47 55 95 93 55; fax +47 55 95 95 43 e-mail: Roger.Bivand at nhh.no