Hi, I am trying to read a fasta file with >15K alignedd sequences. However it crashes showing a runtime error. I have tried both R.3.2.3 and R.3.2.1 under windows 7. A smaller fasta file works perfectly fine in either case.
library(seqinr)
myseqs <- read.alignment("aligned_seqs.fasta",format="fasta")
Thanks,
Eric
read.alignment() crashes
2 messages · Eric Hu, Uwe Ligges
On 01.03.2016 01:34, Eric Hu wrote:
Hi, I am trying to read a fasta file with >15K alignedd sequences. However it crashes showing a runtime error. I have tried both R.3.2.3 and R.3.2.1 under windows 7. A smaller fasta file works perfectly fine in either case.
library(seqinr)
myseqs <- read.alignment("aligned_seqs.fasta",format="fasta")
Just an error message or a crash? In case of an error message: report it. In case of a crash: Report to the seqinr maintainer with a reproducible example. Best, Uwe Ligges
Thanks, Eric [[alternative HTML version deleted]]
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