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Installation Error with Bioconductor on R
2 messages · a a, Martin Morgan
Hi AA Ask on the bioconductor mailing list, following the 'mailing lists' link on the front page http://bioconductor.org and...
A A wrote:
Hi, I am trying to install Bioconductor onto R version 2.7.0 for Windows. I installed R, then followed the instructions on http://www.bioconductor.org/download, which state that you should type the following: source("http://bioconductor.org/biocLite.R") biocLite() When I do that, I get the following error: Running biocinstall version 2.2.9 with R version 2.7.0 Your version of R requires version 2.2 of BioConductor. Will install the following packages: [1] "affy" "affydata" "affyPLM" "annaffy" "annotate" [6] "Biobase" "Biostrings" "DynDoc" "gcrma" "genefilter" [11] "geneplotter" "hgu95av2.db" "limma" "marray" "matchprobes" [16] "multtest" "ROC" "vsn" "xtable" "affyQCReport"
the command biocLite() installs a number of packages; the above message is NOT an error, but an information message saying that the packages mentioned above are to be installed. Likely these packages are retrieved from the internet and installed on your computer, there should be quite a bit more output before returning to R, or are you saying that R stops working after the message above?
Anything that I install after this gives me the same error. I tried uninstalling R 2.7.0 and installing R 2.6.2, and performing the same commands, as above, but the same thing happens. Does anyone have any suggestions? Thanks, A
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