An embedded and charset-unspecified text was scrubbed... Name: not available URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20130108/18db178d/attachment-0001.pl>
Manhattan Plot
3 messages · Einat Granot, Suzen, Mehmet, Tengfei Yin
Hello Einat, Have you tried ggbio package's plotGrandLinear from bioconductor? Best, -m
On 8 January 2013 20:03, Einat Granot <einatgranot at gmail.com> wrote:
Hello,
I am trying to create a simple Manhattan plot for a small list of 200 SNPs
spread out in the genome in different genes.
I have tried different functions (using ggplot2 and a function created by
Stephen Turner, mhtplot etc.)-none of them work smoothly.
Does anyone have a simple way to create the plot (not for all 22
chromosomes)- with the x axis showing the genes name and not the chromosomal
location.
Thanks a lot,
Einat
[[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
An embedded and charset-unspecified text was scrubbed... Name: not available URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20130108/b58d0fed/attachment-0001.pl>