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frailty and time-dependent covariate
2 messages · Emanuela Rossi, Thomas Lumley
On Wed, 17 Nov 2004, Emanuela Rossi wrote:
Hello, I'm trying to estimate a cox model with a frailty variable and time-dependent covariate (below there is the statement I use and the error message). It's seems to be impossible, because every time I add the time-dependent covariate the model doesn't converge. Instead, if I estimate the same model without the time-dependent covariate it's converge. I'd like knowing if it's a statistical problem due to the model formula or if it could be a problem related to my data.
The message you quote probably does not indicate a convergence problem, since it is only in "iterations 1 3". Howver, there does seem to be a bug with interactions of any sort in frailty models, something connected with reordering terms. You could try defining a variable by hand for your interaction term and fitting the model that way. Incidentally, I am not nearly as enthusiastic about the frailty models as many users seem to be. For most multivariate survival problems I wouldn't want to fit a frailty model, and I'm not sure that I would trust the penalised likelihood approximation if I did. The exception would be situations where I was actually interested in the variance components, as in Dr Therneau's new "kinship" package for linkage analysis with survival data. -thomas
Thanks a lot Emanuela Rossi
fit_19_1<-coxph(Surv(DATA_INI1,DATA_FIN1,EVENT1)~ V1+V2+alt1+alt2+strata(autocorr1)+cap1+SP+SP2+SP3+SP3:log(DATA_FIN1)+D1500+D3000+D4500+frailty.gaussian(ID),data=SURV1)
Warning messages:
1: Inner loop failed to coverge for iterations 1 3 in: coxpenal.fit(X, Y, strats, offset, init = init, control, weights = weights,
2: longer object length
is not a multiple of shorter object length in: offset + coxfit$fcoef[x[, fcol]]
3: X matrix deemed to be singular; variable 8 in: coxph(Surv(DATA_INI1, DATA_FIN1, EVENT1) ~ V1 + V2 + alt1 + alt2 +
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Thomas Lumley Assoc. Professor, Biostatistics tlumley at u.washington.edu University of Washington, Seattle