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Whole genome searching of 100bp "D" sequence
3 messages · Amos Folarin, Ben Bolker
Amos Folarin <amosfolarin <at> gmail.com> writes:
I was wondering I'm going about this in the correct way. I need to test if there are coding sequences or exons in hg19 which match a string of 100bp "D" i.e. [A,G or T]. However I'm getting a strange result. I get a hit on chr7, using the 100bp search however when I search with 60bp sequence of "D" I don't get any hits.
Try posting this to the Bioconductor e-mail list, where you will have a much better likelihood of getting useful advice. Only a few hard-core bioinformatics people on this list. (Do mention that you posted here first.) Ben Bolker
4 days later
Thanks, I've done so. -- View this message in context: http://r.789695.n4.nabble.com/Whole-genome-searching-of-100bp-D-sequence-tp3452765p3462574.html Sent from the R help mailing list archive at Nabble.com.