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snow makeCluster (makeSOCKcluster) not working in R-2.11
2 messages · Abhijit Dasgupta, Ramon Diaz-Uriarte
Interesting: I run into the same problem (also R-2.11) when using Windows inside VirtualBox from a Debian host (i.e., I am running a Debian GNU/Linux box that has VirtualBox, and I have a Windows XP as a guest inside VirtualBox). But I attributed it to my setup (usage of VirtualBox) as I was told that my code did run OK in a "true" Windows machine with R-2.11. By the way, the problem did not always show up, just most of the time (about 80% to 90% of the attempts). Best, R.
On Wed, May 12, 2010 at 5:58 PM, Abhijit Dasgupta <dasgupab at mail.nih.gov> wrote:
Hello,
I was using snow to parallel-process some code in R-2.10 (32-bit
windows. ). The code is as follows:
require(foreach)
require(doSNOW)
cl <- makeCluster(6, type='SOCK')
registerDoSNOW(cl)
bl2 <- foreach(i=icount(length(unqmrno))) %dopar% {
(some code here)
}
stopCluster(cl)
When I run the same code in Windows R-2.11 (either 32-bit or 64-bit), R
hangs at cl<-makeCluster(6, type='SOCK') and no R processes are spawned.
I was wondering if others have encountered this problem, and any
suggestions on solving this would be greatly appreciated.
--
Abhijit Dasgupta, PhD
Statistician | Clinical Sciences Section | NIAMS/NIH
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Ramon Diaz-Uriarte Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz Phone: +34-91-732-8000 ext. 3019 Fax: +-34-91-224-6972