I am trying to input an OTU table into EstimateS, however, the format of the
OTU table has to be changed to fit the format EstimateS will accept. In R, I
would like to change the format of the OTU table (from excel). Here is what
I need to do, take Example 1 and create Example 2. The problem is that I
have hundreds of OTUs, so I can't do this by hand (and I'd love to have a
code that I could use for different OTU tables).
Thanks!
Example 1 Example 2
Species Abundance Species
1 3 1
2 2 1
3 2 1
4 2 2
5 4 2
3
3
4
4
5
5
5
5
5
--
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R code help to change table format
2 messages · peziza, Rui Barradas
Hello, You should say what is the package you are using, EstimateS returns hundreds of hits. [ package sos, findFn() ]. As for the question, try sp <- 1:5 ab <- c(3, 2, 2, 2, 4) rep(sp, ab) Hope this helps, Rui Barradas Em 10-07-2012 18:23, peziza escreveu:
I am trying to input an OTU table into EstimateS, however, the format of the OTU table has to be changed to fit the format EstimateS will accept. In R, I would like to change the format of the OTU table (from excel). Here is what I need to do, take Example 1 and create Example 2. The problem is that I have hundreds of OTUs, so I can't do this by hand (and I'd love to have a code that I could use for different OTU tables). Thanks! Example 1 Example 2 Species Abundance Species 1 3 1 2 2 1 3 2 1 4 2 2 5 4 2 3 3 4 4 5 5 5 5 5 -- View this message in context: http://r.789695.n4.nabble.com/R-code-help-to-change-table-format-tp4636022.html Sent from the R help mailing list archive at Nabble.com.
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