installing Rgraphviz under fedora 5

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The problem is that libgvc.so.3 is not in your dynamic library search 
path.  That's true by default for FC5, it is in /usr/lib64/graphviz on a 
x86_64 FC5 box.

The proper solution is to fix the FC5 graphviz installation to tell ld.so 
about the location.  A simpler way is to add /usr/lib64/graphviz to the 
LD_LIBRARY_PATH: on our servers we have edited R_HOME/etc/ldpaths to do 
so, so we have

: ${R_LD_LIBRARY_PATH=${R_HOME}/lib:/usr/local/lib64:/opt/export/lib64:/usr/lib6
4/graphviz}

If you don't have permissions to do this, set it in your personal 
LD_LIBRARY_PATH.

BTW, asking questions about installing Bioconductor is best done on their 
mailing list, not R-help.

Dear list,

I have a lot of troubles installing Rgraphviz.
I installed graphviz 2.13 from  "graphviz-2.13.20061222.0540.tar"
I installed the library Rgraphviz

getBioC("Rgraphviz")
Running biocinstall version 2.0.8 with R version 2.5.0
Your version of R requires version 2.0 of Bioconductor.
trying URL '
http://bioconductor.org/packages/2.0/bioc/src/contrib/Rgraphviz_1.14.0.tar.gz
'
Content type 'application/x-gzip' length 1522949 bytes

etc etc....

but when I do: library(Rgraphviz)

library(Rgraphviz)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
       unable to load shared library '/home/jke/mazu/SOFTWARE_INST/R-2.5.0
/library/Rgraphviz/libs/Rgraphviz.so':
 libgvc.so.3: cannot open shared object file: No such file or directory
Error : .onLoad failed in 'loadNamespace' for 'Rgraphviz'
Error: package/namespace load failed for 'Rgraphviz'

The path to Rgraphviz.so is correct !

Can someone help with this?

this is the session info ....

regards

Marco

sessioninfo()
Error: could not find function "sessioninfo"
sessionInfo()
R version 2.5.0 (2007-04-23)
x86_64-unknown-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] "tools"     "stats"     "graphics"  "grDevices" "datasets"  "utils"
[7] "methods"   "base"

other attached packages:
geneplotter     lattice    annotate     Biobase       graph
  "1.14.0"    "0.15-4"    "1.14.1"    "1.14.0"    "1.14.2"

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"marco.R.help marco.R.help" <marco.r.help at gmail.com> writes:
Dear list,

 I have a lot of troubles installing Rgraphviz.
I installed graphviz 2.13 from  "graphviz-2.13.20061222.0540.tar"
I installed the library Rgraphviz
I'm pretty sure that you will have problems with graphviz 2.13 and
that you will need to use graphviz 2.12.

+ seth
Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center
http://bioconductor.org