need help to convert animal ID to a factor

4 messages · Neny Sitorus, David Winsemius, Jeff Newmiller

Original

1

4

Neny Sitorus

Sun, May 22, 2016 9:46 PM #

Hi,

I was trying to convert my animal ID experiment (ID) to factor to get the
ggboxplot, previously it was working well.
But since yesterday it displayed "Error" every time I tried to re-run it.
Could you help me in this issue?


# convert rat ID to factor
Leak.df <- toFactor(Leak.df, id.var=c("ID", "Time"))

Error: could not find function "toFactor"

Looking forward for your reply.


Kind regards,
Neny

On 23 May 2016 at 15:59, Jim Lemon <drjimlemon at gmail.com> wrote:

Okay, perhaps if you try this:

cellcontrol<-
 loadNetwork("C:/Users/mohammad/Documents/cellcontrol.txt")
stateTransition(cellcontrol, rep(1,11))

Obviously this is a guess, but it might help.

Jim


On Mon, May 23, 2016 at 1:55 PM, mohammad alsharaiah
<mohdsharaiah at gmail.com> wrote:

Hi jim ,
first of all iwant to thank you for your reply.
the object "cellcontrol" its a network that i created it by using

boolnet

package. when i call the network its loaded inside the R workspace

screen.

but i got this error when i want to work on it.

boolnet allow to us to create the network and write a logical rules  in

text

file, then we can loaded it as a network inside R to study the dynamic
behavior.

but i can not work on it because this error and converting it to data

file.







Mohammad


On Sun, May 22, 2016 at 8:40 PM, Jim Lemon <drjimlemon at gmail.com> wrote:

Hi Mohammad,
I don't have the BoolNet package installed, but the error means that
the object "cellcontrol" is not there for the function to use. It
should be a network "generated by generateRandomNKNetwork, or
reconstructed by reconstructNetwork" as detailed in the help pages.

Jim


On Mon, May 23, 2016 at 11:07 AM, mohammad alsharaiah
<mohdsharaiah at gmail.com> wrote:

Hi,

every one , im using Boolnet package inside R environment to create a
boolean network.

after i create a text file for the Boolean network  and  i loaded it

by

using R  by using this command:

 > library(BoolNet)
loadNetwork("C:/Users/mohammad/Documents/cellcontrol.txt")

then its loaded inside R screen. But when i started to do some of

tasks

on
this network every time i got this error message, this is an example

how

i
work on the created network and get the error.

stateTransition(cellcontrol, rep(1,11))

Error in inherits(network, "BooleanNetwork") :
  object 'cellcontrol' not found

please can any one help me to solve this error .

Reagdrs,




*Mohammad *

        [[alternative HTML version deleted]]

______________________________________________
R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

______________________________________________
R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

David Winsemius

Sun, May 22, 2016 11:39 PM #

I've got quite a few packages loaded and yet I get:

No documentation for ?toFactor? in specified packages and libraries:
you could try ???toFactor?

So it's a function from some undetermined package and It's not even locatable with sos::findFn. I suspect you have forgotten to load it (whatever _it_ is.

David.


> 
> 
> Kind regards,
> Neny
> 
> On 23 May 2016 at 15:59, Jim Lemon <drjimlemon at gmail.com> wrote:
> 
>> Okay, perhaps if you try this:
>> 
>> cellcontrol<-
>> loadNetwork("C:/Users/mohammad/Documents/cellcontrol.txt")
>> stateTransition(cellcontrol, rep(1,11))
>> 
>> Obviously this is a guess, but it might help.
>> 
>> Jim
>> 
>> 
>> On Mon, May 23, 2016 at 1:55 PM, mohammad alsharaiah
>> <mohdsharaiah at gmail.com> wrote:
>>> Hi jim ,
>>> first of all iwant to thank you for your reply.
>>> the object "cellcontrol" its a network that i created it by using
>> boolnet
>>> package. when i call the network its loaded inside the R workspace
>> screen.
>>> but i got this error when i want to work on it.
>>> 
>>> boolnet allow to us to create the network and write a logical rules  in
>> text
>>> file, then we can loaded it as a network inside R to study the dynamic
>>> behavior.
>>> 
>>> but i can not work on it because this error and converting it to data
>> file.
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> Mohammad
>>> 
>>> 
>>> On Sun, May 22, 2016 at 8:40 PM, Jim Lemon <drjimlemon at gmail.com> wrote:
>>>> 
>>>> Hi Mohammad,
>>>> I don't have the BoolNet package installed, but the error means that
>>>> the object "cellcontrol" is not there for the function to use. It
>>>> should be a network "generated by generateRandomNKNetwork, or
>>>> reconstructed by reconstructNetwork" as detailed in the help pages.
>>>> 
>>>> Jim
>>>> 
>>>> 
>>>> On Mon, May 23, 2016 at 11:07 AM, mohammad alsharaiah
>>>> <mohdsharaiah at gmail.com> wrote:
>>>>> Hi,
>>>>> 
>>>>> every one , im using Boolnet package inside R environment to create a
>>>>> boolean network.
>>>>> 
>>>>> after i create a text file for the Boolean network  and  i loaded it
>> by
>>>>> using R  by using this command:
>>>>> 
>>>>>> library(BoolNet)
>>>>>> loadNetwork("C:/Users/mohammad/Documents/cellcontrol.txt")
>>>>> 
>>>>> then its loaded inside R screen. But when i started to do some of
>> tasks
>>>>> on
>>>>> this network every time i got this error message, this is an example
>> how
>>>>> i
>>>>> work on the created network and get the error.
>>>>> 
>>>>>> stateTransition(cellcontrol, rep(1,11))
>>>>> Error in inherits(network, "BooleanNetwork") :
>>>>>  object 'cellcontrol' not found
>>>>>> 
>>>>> 
>>>>> please can any one help me to solve this error .
>>>>> 
>>>>> Reagdrs,
>>>>> 
>>>>> 
>>>>> 
>>>>> 
>>>>> *Mohammad *
>>>>> 
>>>>>        [[alternative HTML version deleted]]
>>>>> 
>>>>> ______________________________________________
>>>>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>> PLEASE do read the posting guide
>>>>> http://www.R-project.org/posting-guide.html
>>>>> and provide commented, minimal, self-contained, reproducible code.
>>> 
>>> 
>> 
>> ______________________________________________
>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>> 
> 
> 	[[alternative HTML version deleted]]
> 
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

David Winsemius
Alameda, CA, USA

Sun, May 22, 2016 11:49 PM #

I am not familiar with any function called "toFactor". It may be part of some contributed package that you need to re-load. 

However, one does not ordinarily need to use a package to convert one column of a data frame into a factor, since factors are supported by base R.

Eg

MyDF$ID <- factor( MyDF$ID )

Sent from my phone. Please excuse my brevity.

On May 22, 2016 9:46:30 PM PDT, Neny Sitorus <nsit315 at aucklanduni.ac.nz> wrote:
>Hi,
>
>I was trying to convert my animal ID experiment (ID) to factor to get
>the
>ggboxplot, previously it was working well.
>But since yesterday it displayed "Error" every time I tried to re-run
>it.
>Could you help me in this issue?
>
>
># convert rat ID to factor
>Leak.df <- toFactor(Leak.df, id.var=c("ID", "Time"))
>
>>From Console:
>> ets.df <- toFactor(ets.df, id.var=c("ID", "Time"))
>Error: could not find function "toFactor"
>
>Looking forward for your reply.
>
>
>Kind regards,
>Neny
>
>On 23 May 2016 at 15:59, Jim Lemon <drjimlemon at gmail.com> wrote:
>
>> Okay, perhaps if you try this:
>>
>> cellcontrol<-
>>  loadNetwork("C:/Users/mohammad/Documents/cellcontrol.txt")
>> stateTransition(cellcontrol, rep(1,11))
>>
>> Obviously this is a guess, but it might help.
>>
>> Jim
>>
>>
>> On Mon, May 23, 2016 at 1:55 PM, mohammad alsharaiah
>> <mohdsharaiah at gmail.com> wrote:
>> > Hi jim ,
>> > first of all iwant to thank you for your reply.
>> > the object "cellcontrol" its a network that i created it by using
>> boolnet
>> > package. when i call the network its loaded inside the R workspace
>> screen.
>> > but i got this error when i want to work on it.
>> >
>> > boolnet allow to us to create the network and write a logical rules
> in
>> text
>> > file, then we can loaded it as a network inside R to study the
>dynamic
>> > behavior.
>> >
>> > but i can not work on it because this error and converting it to
>data
>> file.
>> >
>> >
>> >
>> >
>> >
>> >
>> >
>> > Mohammad
>> >
>> >
>> > On Sun, May 22, 2016 at 8:40 PM, Jim Lemon <drjimlemon at gmail.com>
>wrote:
>> >>
>> >> Hi Mohammad,
>> >> I don't have the BoolNet package installed, but the error means
>that
>> >> the object "cellcontrol" is not there for the function to use. It
>> >> should be a network "generated by generateRandomNKNetwork, or
>> >> reconstructed by reconstructNetwork" as detailed in the help
>pages.
>> >>
>> >> Jim
>> >>
>> >>
>> >> On Mon, May 23, 2016 at 11:07 AM, mohammad alsharaiah
>> >> <mohdsharaiah at gmail.com> wrote:
>> >> > Hi,
>> >> >
>> >> > every one , im using Boolnet package inside R environment to
>create a
>> >> > boolean network.
>> >> >
>> >> > after i create a text file for the Boolean network  and  i
>loaded it
>> by
>> >> > using R  by using this command:
>> >> >
>> >> >  > library(BoolNet)
>> >> >> loadNetwork("C:/Users/mohammad/Documents/cellcontrol.txt")
>> >> >
>> >> > then its loaded inside R screen. But when i started to do some
>of
>> tasks
>> >> > on
>> >> > this network every time i got this error message, this is an
>example
>> how
>> >> > i
>> >> > work on the created network and get the error.
>> >> >
>> >> >> stateTransition(cellcontrol, rep(1,11))
>> >> > Error in inherits(network, "BooleanNetwork") :
>> >> >   object 'cellcontrol' not found
>> >> >>
>> >> >
>> >> > please can any one help me to solve this error .
>> >> >
>> >> > Reagdrs,
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > *Mohammad *
>> >> >
>> >> >         [[alternative HTML version deleted]]
>> >> >
>> >> > ______________________________________________
>> >> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more,
>see
>> >> > https://stat.ethz.ch/mailman/listinfo/r-help
>> >> > PLEASE do read the posting guide
>> >> > http://www.R-project.org/posting-guide.html
>> >> > and provide commented, minimal, self-contained, reproducible
>code.
>> >
>> >
>>
>> ______________________________________________
>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
>	[[alternative HTML version deleted]]
>
>______________________________________________
>R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.

	[[alternative HTML version deleted]]

Neny Sitorus

Mon, May 23, 2016 3:43 PM #

Thanks for your advise.
Just wondering, since I have to analyse my data with "Mixed model analysis
in R"
and I'm not familiar at all with this software, just try to use it within a
week and need to write my analysis result as soon as I can, could you
please advise me of what does mixed model analysis mean?


Kind regards,
Neny

On 23 May 2016 at 16:46, Neny Sitorus <nsit315 at aucklanduni.ac.nz> wrote:

Hi,

I was trying to convert my animal ID experiment (ID) to factor to get the
ggboxplot, previously it was working well.
But since yesterday it displayed "Error" every time I tried to re-run it.
Could you help me in this issue?


# convert rat ID to factor
Leak.df <- toFactor(Leak.df, id.var=c("ID", "Time"))

From Console:

ets.df <- toFactor(ets.df, id.var=c("ID", "Time"))

Error: could not find function "toFactor"

Looking forward for your reply.


Kind regards,
Neny

On 23 May 2016 at 15:59, Jim Lemon <drjimlemon at gmail.com> wrote:

Okay, perhaps if you try this:

cellcontrol<-
 loadNetwork("C:/Users/mohammad/Documents/cellcontrol.txt")
stateTransition(cellcontrol, rep(1,11))

Obviously this is a guess, but it might help.

Jim


On Mon, May 23, 2016 at 1:55 PM, mohammad alsharaiah
<mohdsharaiah at gmail.com> wrote:

Hi jim ,
first of all iwant to thank you for your reply.
the object "cellcontrol" its a network that i created it by using

boolnet

package. when i call the network its loaded inside the R workspace

screen.

but i got this error when i want to work on it.

boolnet allow to us to create the network and write a logical rules  in

text

file, then we can loaded it as a network inside R to study the dynamic
behavior.

but i can not work on it because this error and converting it to data

file.







Mohammad


On Sun, May 22, 2016 at 8:40 PM, Jim Lemon <drjimlemon at gmail.com>

wrote:

Hi Mohammad,
I don't have the BoolNet package installed, but the error means that
the object "cellcontrol" is not there for the function to use. It
should be a network "generated by generateRandomNKNetwork, or
reconstructed by reconstructNetwork" as detailed in the help pages.

Jim


On Mon, May 23, 2016 at 11:07 AM, mohammad alsharaiah
<mohdsharaiah at gmail.com> wrote:

Hi,

every one , im using Boolnet package inside R environment to create a
boolean network.

after i create a text file for the Boolean network  and  i loaded it

by

using R  by using this command:

 > library(BoolNet)
loadNetwork("C:/Users/mohammad/Documents/cellcontrol.txt")

then its loaded inside R screen. But when i started to do some of

tasks

on
this network every time i got this error message, this is an example

how

i
work on the created network and get the error.

stateTransition(cellcontrol, rep(1,11))

Error in inherits(network, "BooleanNetwork") :
  object 'cellcontrol' not found

please can any one help me to solve this error .

Reagdrs,




*Mohammad *

        [[alternative HTML version deleted]]

______________________________________________
R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

______________________________________________
R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.