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Nolinear mixed-effects models (nlme)
2 messages · Alex Bach, Douglas Bates
On 6/30/05, Alex Bach <alex.bach at irta.es> wrote:
Hello, I am trying to fit a nonlinear model of the form of: A*x^b*exp(-c*x) This represents a lactation curve. I have a bunch of cows, so I want COW to be a random effect.
You need to decide which of the model parameters (i.e. A, B and C) should have a random effect grouped by COW and to specify this in your call to nlme.
I have been trying the following code with very littel success:
> fm1 <- nlme(yield ~ A*(DIM^B)*(exp(-C*DIM)),
+ data = group,
+ fixed = A + B + C ~ 1,
+ start = c(A = 20, B = 0.3, C = 0.03))
Does anyone know how to add the random effect of the cow? I have used
the command groupedData to have Cow as subject (i.e., yield~DIM |
cow). Is this a valid and sufficient approach? I have the feeling it
is not sufficient.
Also, does anyone know whether the formulation of the fixed effects
is correct?.
Thank you very much,
Alex
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