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Contrasts for a data
2 messages · jing tang, Bert Gunter
Rail is an ordered factor. ?ordered for details. Default contrasts for an ordered factor are orthogonal polynomials. See: https://stat.ethz.ch/pipermail/r-help/2007-January/123268.html and http://www.ats.ucla.edu/stat/r/library/contrast_coding.htm#ORTHOGONAL -- Bert
On Fri, Feb 8, 2013 at 1:36 PM, jing tang <gimmytang at gmail.com> wrote:
Hi, I am using a data called Rail in the nlme package. The data contains two variables: Rail and Travel.
Rail
Grouped Data: travel ~ 1 | Rail Rail travel 1 1 55 2 1 53 3 1 54 4 2 26 5 2 37 6 2 32 7 3 78 8 3 91 9 3 85 10 4 92 11 4 100 12 4 96 13 5 49 14 5 51 15 5 50 16 6 80 17 6 85 18 6 83
Rail$Rail [1] 1 1 1 2 2 2 3 3 3 4 4 4 5 5 5 6 6 6 Levels: 2 < 5 < 1 < 6 < 3 < 4
Then I used the contrasts function as:
contrasts(Rail$Rail)
And it returns with some strange continuous values:
.L .Q .C ^4 ^5
[1,] -0.5976143 0.5455447 -0.3726780 0.1889822 -0.06299408
[2,] -0.3585686 -0.1091089 0.5217492 -0.5669467 0.31497039
[3,] -0.1195229 -0.4364358 0.2981424 0.3779645 -0.62994079
[4,] 0.1195229 -0.4364358 -0.2981424 0.3779645 0.62994079
[5,] 0.3585686 -0.1091089 -0.5217492 -0.5669467 -0.31497039
[6,] 0.5976143 0.5455447 0.3726780 0.1889822 0.06299408
I am expecting to see 0s and 1s in the contrast, but it may be due to the
order of the factor levels for Rail variable?
Best,
Jing
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Bert Gunter Genentech Nonclinical Biostatistics Internal Contact Info: Phone: 467-7374 Website: http://pharmadevelopment.roche.com/index/pdb/pdb-functional-groups/pdb-biostatistics/pdb-ncb-home.htm