Dear all I enclose 3 electron microscope images in which I would like to evaluate plane spacing. Before I start to dig deeper and use trial and error in trying to find some packages/functions for such pattern evaluation in electron microscopy pictures I would like to ask if anybody could point me to suitable packages/functions. I am aware of EBImage package for general purpose image manipulation, but it does not have such functionality. Best regards Petr If images did not came through please use this link: St?hnout soubory<https://uschovna.agrofert.cz/dshosts/getfiles.aspx?fip=2475efa6-a77b-4ff6-8155-d9302e7b151b>. Osobn? ?daje: Informace o zpracov?n? a ochran? osobn?ch ?daj? obchodn?ch partner? PRECHEZA a.s. jsou zve?ejn?ny na: https://www.precheza.cz/zasady-ochrany-osobnich-udaju/ | Information about processing and protection of business partner's personal data are available on website: https://www.precheza.cz/en/personal-data-protection-principles/ D?v?rnost: Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a podl?haj? tomuto pr?vn? z?vazn?mu prohl??en? o vylou?en? odpov?dnosti: https://www.precheza.cz/01-dovetek/ | This email and any documents attached to it may be confidential and are subject to the legally binding disclaimer: https://www.precheza.cz/en/01-disclaimer/
pattern evaluation in electron microscopy images
3 messages · S Ellison, PIKAL Petr
3 days later
Not really my field, but would you not approach this using FFT on selected regions? I think IMageJ has some capability in that area; see example at https://imagej.nih.gov/ij/docs/examples/tem/. Steve Ellison
-----Original Message----- From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of PIKAL Petr Sent: 08 February 2019 09:54 To: r-help at r-project.org Subject: [R] pattern evaluation in electron microscopy images Dear all I enclose 3 electron microscope images in which I would like to evaluate plane spacing. Before I start to dig deeper and use trial and error in trying to find some packages/functions for such pattern evaluation in electron microscopy pictures I would like to ask if anybody could point me to suitable packages/functions. I am aware of EBImage package for general purpose image manipulation, but it does not have such functionality. Best regards Petr If images did not came through please use this link: St?hnout soubory<https://uschovna.agrofert.cz/dshosts/getfiles.aspx?fip=2475efa6- a77b-4ff6-8155-d9302e7b151b>. Osobn? ?daje: Informace o zpracov?n? a ochran? osobn?ch ?daj? obchodn?ch partner? PRECHEZA a.s. jsou zve?ejn?ny na: https://www.precheza.cz/zasady-ochrany-osobnich-udaju/ | Information about processing and protection of business partner's personal data are available on website: https://www.precheza.cz/en/personal-data- protection-principles/ D?v?rnost: Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a podl?haj? tomuto pr?vn? z?vazn?mu prohl??en? o vylou?en? odpov?dnosti: https://www.precheza.cz/01-dovetek/ | This email and any documents attached to it may be confidential and are subject to the legally binding disclaimer: https://www.precheza.cz/en/01-disclaimer/
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3 days later
Hallo Steve. Thank you for pointing to ImageJ, I will try to inspect it. I expected that somebody in R comunity automated such procedure within some R package, but it is probably too specialised. S pozdravem | Best Regards RNDr. Petr PIKAL Vedouc? V?zkumu a v?voje | Research Manager PRECHEZA a.s. n?b?. Dr. Edvarda Bene?e 1170/24 | 750 02 P?erov | Czech Republic Tel: +420 581 252 256 | GSM: +420 724 008 364 petr.pikal at precheza.cz | www.precheza.cz Osobn? ?daje: Informace o zpracov?n? a ochran? osobn?ch ?daj? obchodn?ch partner? PRECHEZA a.s. jsou zve?ejn?ny na: https://www.precheza.cz/zasady-ochrany-osobnich-udaju/ | Information about processing and protection of business partner's personal data are available on website: https://www.precheza.cz/en/personal-data-protection-principles/ D?v?rnost: Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a podl?haj? tomuto pr?vn? z?vazn?mu prohl??en? o vylou?en? odpov?dnosti: https://www.precheza.cz/01-dovetek/ | This email and any documents attached to it may be confidential and are subject to the legally binding disclaimer: https://www.precheza.cz/en/01-disclaimer/
-----Original Message----- From: S Ellison <S.Ellison at LGCGroup.com> Sent: Monday, February 11, 2019 12:54 PM To: PIKAL Petr <petr.pikal at precheza.cz>; r-help at r-project.org Subject: RE: pattern evaluation in electron microscopy images Not really my field, but would you not approach this using FFT on selected regions? I think IMageJ has some capability in that area; see example at https://imagej.nih.gov/ij/docs/examples/tem/. Steve Ellison
-----Original Message----- From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of PIKAL Petr Sent: 08 February 2019 09:54 To: r-help at r-project.org Subject: [R] pattern evaluation in electron microscopy images Dear all I enclose 3 electron microscope images in which I would like to evaluate plane spacing. Before I start to dig deeper and use trial and error in trying to find some packages/functions for such pattern evaluation in electron microscopy pictures I would like to ask if anybody could point me to suitable packages/functions. I am aware of EBImage package for general purpose image manipulation, but it does not have such functionality. Best regards Petr If images did not came through please use this link: St?hnout soubory<https://uschovna.agrofert.cz/dshosts/getfiles.aspx?fip=2475efa 6- a77b-4ff6-8155-d9302e7b151b>. Osobn? ?daje: Informace o zpracov?n? a ochran? osobn?ch ?daj? obchodn?ch partner? PRECHEZA a.s. jsou zve?ejn?ny na: https://www.precheza.cz/zasady-ochrany-osobnich-udaju/ | Information about processing and protection of business partner's personal data are available on website: https://www.precheza.cz/en/personal-data- protection-principles/ D?v?rnost: Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a podl?haj? tomuto pr?vn? z?vazn?mu prohl??en? o vylou?en? odpov?dnosti: https://www.precheza.cz/01-dovetek/ | This email and any documents attached to it may be confidential and are subject to the legally binding disclaimer: https://www.precheza.cz/en/01-disclaimer/
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting- guide.html and provide commented, minimal, self-contained, reproducible code.
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