Thank you so much it is getting better (see attach) when I do: ggplot( data = tmp.tidy) +geom_point( aes(y = -log10(value),x = CHR,color=key) ,position = "jitter", size=0.5 ) is there is a way to have separation between every chromosome shown better and also every number of chromosome shown on the x-axis?
On Thu, Jun 11, 2020 at 4:39 PM <cpolwart at chemo.org.uk> wrote:
Your dots are too big! Add geom_points(... , size = 1 May need to play... 0.5 or 0.1? On 11 Jun 2020 22:26, Ana Marija <sokovic.anamarija at gmail.com> wrote: I tried it, ggplot( data = tmp.tidy) +geom_point( aes(y = BP,x = CHR,color=key) ,position = "jitter" ) I got the attached On Thu, Jun 11, 2020 at 4:18 PM <cpolwart at chemo.org.uk> wrote:
Try adding position = "jitter" to the geom_point(... On 11 Jun 2020 21:41, Ana Marija <sokovic.anamarija at gmail.com> wrote: Hello, I tried your code and this is what I got I really need two groups side by side shown per chromosome as it is here: https://imgur.com/a/pj40c on the image there are 4 groups I do have only two On Thu, Jun 11, 2020 at 11:52 AM <cpolwart at chemo.org.uk> wrote:
On 2020-06-11 15:59, Ana Marija wrote:
yes all in one plot. So I want key (and therefore color)to be "Pold" and "Pnew" as those I am comparing per CHR so I used facet_wrap(~CHR) to create a graph per chromosome (on x-axis) On the end x-axis would have two strikes of Pold and Pnew (different colors) per one chromosome, and CHR would go from 1 to 22
ggplot( data = tmp.tidy) +
geom_point( aes(
y = BP,
x = CHR,
color=key) )
?