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install the Bioconductor package “yeastExpData”

2 messages · AbouEl-Makarim Aboueissa, Bert Gunter

#
Dear All:

I am trying to install the Bioconductor package ?yeastExpData?. By the end
I got an error message, please see below. I am not sure what is wrong.
Bioconductor version 3.0 (BiocInstaller 1.16.5), ?biocLite for help
A new version of Bioconductor is available after installing the most recent
  version of R; see http://bioconductor.org/install
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.0 (BiocInstaller 1.16.5), R version 3.1.2.
Installing package(s) 'yeastExpData'
also installing the dependency ?graph?

trying URL '
http://bioconductor.org/packages/3.0/bioc/bin/windows/contrib/3.1/graph_1.44.1.zip
'
Content type 'application/zip' length 2746668 bytes (2.6 Mb)
opened URL
downloaded 2.6 Mb

trying URL '
http://bioconductor.org/packages/3.0/data/experiment/bin/windows/contrib/3.1/yeastExpData_0.11.1.zip
'
Content type 'application/zip' length 1936545 bytes (1.8 Mb)
opened URL
downloaded 1.8 Mb

package ?graph? successfully unpacked and MD5 sums checked
package ?yeastExpData? successfully unpacked and MD5 sums checked

The downloaded binary packages are in

C:\Users\aaboueissa\AppData\Local\Temp\RtmpYNOhi3\downloaded_packages
Old packages: 'boot', 'class', 'cluster', 'codetools', 'foreign',
'KernSmooth',
  'lattice', 'MASS', 'Matrix', 'mgcv', 'nlme', 'nnet', 'rpart', 'spatial',
  'survival'
*Update all/some/none? [a/s/n]: a*
*Warning in install.packages(update[instlib == l, "Package"], l, contriburl
= contriburl,  :*
*  'lib = "C:/Program Files/R/R-3.1.2/library"' is not writable*
*Error in install.packages(update[instlib == l, "Package"], l, contriburl =
contriburl,  : *
*  unable to install packages*
Loading required package: graph
with thanks
abou
#
It looks like a permissions problem. You might want to check with your
local IT support.

Cheers,
Bert


Bert Gunter

"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Fri, Dec 16, 2016 at 6:33 AM, AbouEl-Makarim Aboueissa
<abouelmakarim1962 at gmail.com> wrote: