#UPDATED 05/05/2020 #RStudio Version Version 1.2.1335 need this one--> 1.2.5019 sessionInfo() # R version 4.0.0 Patched (2020-05-03 r78349) #Platform: x86_64-w64-mingw32/x64 (64-bit) #Running under: Windows 10 x64 (build 17763) Good morning. This is the first time I have tried RMarkdown on new laptop with new employer. I am not sure how to go about fixing this problem below? Would someone please advise course of action. Thank you. WHP processing file: Member-Geo-Location-Test-V1.Rmd |.......... | 14% ordinary text without R code |.................... | 29% label: unnamed-chunk-1 (with options) List of 1 $ echo: logi FALSE |.............................. | 43% ordinary text without R code |........................................ | 57% label: setup (with options) List of 2 $ include: logi FALSE $ warning: logi FALSE |.................................................. | 71% ordinary text without R code |............................................................ | 86% label: Table1 (with options) List of 2 $ echo : logi FALSE $ results: chr "asis" |......................................................................| 100% inline R code fragments output file: Member-Geo-Location-Test-V1.knit.md "C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS Member-Geo-Location-Test-V1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output Member-Geo-Location-Test-V1.html --email-obfuscation none --self-contained --standalone --section-divs --template "\\winp-oaf-113\FldrRedir_1$\A436798\Data\R\R-4.0.0patched\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:bootstrap" --include-in-header "C:\Users\A436798\AppData\Local\Temp\RtmpSajZla\rmarkdown-str2ae846253313.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/lua/latex-div.lua" Could not fetch http://?/UNC/winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/h/default.html HttpExceptionRequest Request { host = "" port = 80 secure = False requestHeaders = [] path = "/" queryString = "?/UNC/winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/h/default.html" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 } (InvalidDestinationHost "") Error: pandoc document conversion failed with error 61 Execution halted WHP Proprietary NOTICE TO RECIPIENT OF INFORMATION:\ This e-mail may con...{{dropped:16}}
Help with R-Markdown please
9 messages · Ege Rubak, Poling, William, Rasmus Liland
Looks like your files are on a Windows network drive (UNC path). I have experienced many problems with this on a Windows laptop from work. If at all possible you should avoid this. As an absolute minimum make sure your R library (collection of installed packages) is on the local file system and not a UNC path. If you are lucky this could be enough to make things work. You can check your library location(s) with the command .libPaths() in an R session. Good luck. Ege
On Tue, 2020-05-12 at 10:15 +0000, Poling, William via R-help wrote:
#UPDATED 05/05/2020 #RStudio Version Version 1.2.1335 need this one--> 1.2.5019 sessionInfo() # R version 4.0.0 Patched (2020-05-03 r78349) #Platform: x86_64-w64-mingw32/x64 (64-bit) #Running under: Windows 10 x64 (build 17763) Good morning. This is the first time I have tried RMarkdown on new laptop with new employer. I am not sure how to go about fixing this problem below? Would someone please advise course of action. Thank you. WHP processing file: Member-Geo-Location-Test-V1.Rmd |.......... | 14% ordinary text without R code |.................... | 29% label: unnamed-chunk-1 (with options) List of 1 $ echo: logi FALSE |.............................. | 43% ordinary text without R code |........................................ | 57% label: setup (with options) List of 2 $ include: logi FALSE $ warning: logi FALSE |.................................................. | 71% ordinary text without R code |............................................................ | 86% label: Table1 (with options) List of 2 $ echo : logi FALSE $ results: chr "asis" |.................................................................... ..| 100% inline R code fragments output file: Member-Geo-Location-Test-V1.knit.md "C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS Member- Geo-Location-Test-V1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output Member-Geo-Location-Test-V1.html --email-obfuscation none --self- contained --standalone --section-divs --template "\\winp-oaf- 113\FldrRedir_1$\A436798\Data\R\R- 4.0.0patched\library\rmarkdown\rmd\h\default.html" --no-highlight -- variable highlightjs=1 --variable "theme:bootstrap" --include-in- header "C:\Users\A436798\AppData\Local\Temp\RtmpSajZla\rmarkdown- str2ae846253313.html" --mathjax --variable "mathjax-url: https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML " --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/lua/latex-div.lua" Could not fetch http://?/UNC/winp-oaf- 113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/h/default.html HttpExceptionRequest Request { host = "" port = 80 secure = False requestHeaders = [] path = "/" queryString = "?/UNC/winp-oaf- 113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/h/default.html" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 } (InvalidDestinationHost "") Error: pandoc document conversion failed with error 61 Execution halted WHP Proprietary NOTICE TO RECIPIENT OF INFORMATION:\ This e-mail may con...{{dropped:16}}
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Ege Rubak, Associate Professor, Department of Mathematical Sciences, Aalborg University Skjernvej 4A, 9220 Aalborg East, Denmark Phone: (+45)99408861 Mobile: (+45)30230252 Email: rubak at math.aau.dk
Wow, ok, yep "\\\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library" Thank you Ege. I did not have this issue with previous employer, I will see what our IT group says. Thank you WHP William H. Poling Ph.D., MPH? |?Senior Data Scientist, Medicare Stars, CVS Health p?813-777-5030 Proprietary -----Original Message----- From: Ege Rubak <rubak at math.aau.dk> Sent: Tuesday, May 12, 2020 7:43 AM To: Poling, William <PolingW at aetna.com>; r-help at r-project.org Subject: [EXTERNAL] Re: [R] Help with R-Markdown please **** External Email - Use Caution **** Looks like your files are on a Windows network drive (UNC path). I have experienced many problems with this on a Windows laptop from work. If at all possible you should avoid this. As an absolute minimum make sure your R library (collection of installed packages) is on the local file system and not a UNC path. If you are lucky this could be enough to make things work. You can check your library location(s) with the command .libPaths() in an R session. Good luck. Ege
On Tue, 2020-05-12 at 10:15 +0000, Poling, William via R-help wrote:
#UPDATED 05/05/2020 #RStudio Version Version 1.2.1335 need this one--> 1.2.5019 sessionInfo() # R version 4.0.0 Patched (2020-05-03 r78349) #Platform: x86_64-w64-mingw32/x64 (64-bit) #Running under: Windows 10 x64 (build 17763) Good morning. This is the first time I have tried RMarkdown on new laptop with new employer. I am not sure how to go about fixing this problem below? Would someone please advise course of action. Thank you. WHP processing file: Member-Geo-Location-Test-V1.Rmd |.......... | 14% ordinary text without R code |.................... | 29% label: unnamed-chunk-1 (with options) List of 1 $ echo: logi FALSE |.............................. | 43% ordinary text without R code |........................................ | 57% label: setup (with options) List of 2 $ include: logi FALSE $ warning: logi FALSE |.................................................. | 71% ordinary text without R code |............................................................ | 86% label: Table1 (with options) List of 2 $ echo : logi FALSE $ results: chr "asis" |.................................................................... ..| 100% inline R code fragments output file: Member-Geo-Location-Test-V1.knit.md "C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS Member- Geo-Location-Test-V1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output Member-Geo-Location-Test-V1.html --email-obfuscation none --self- contained --standalone --section-divs --template "\\winp-oaf- 113\FldrRedir_1$\A436798\Data\R\R- 4.0.0patched\library\rmarkdown\rmd\h\default.html" --no-highlight -- variable highlightjs=1 --variable "theme:bootstrap" --include-in- header "C:\Users\A436798\AppData\Local\Temp\RtmpSajZla\rmarkdown- str2ae846253313.html" --mathjax --variable "mathjax-url: https://urldefense.proofpoint.com/v2/url?u=https-3A__mathjax.rstudio.c om_latest_MathJax.js-3Fconfig-3DTeX-2DAMS-2DMML-5FHTMLorMML&d=DwIGaQ&c =wluqKIiwffOpZ6k5sqMWMBOn0vyYnlulRJmmvOXCFpM&r=j7MrcIQm2xjHa8v-2mTpmTC tKvneM2ExlYvnUWbsByY&m=uBce0mQRO8wdLXO8BDTtjk4R92KVzpjtkQ-NqYiAHCo&s=S MNU_B--j9FvBKh-0u1NG5RHd7AtLkvyVsi9ybyUwYU&e= " --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/lua/latex-div.lua" Could not fetch http://?/UNC/winp-oaf- 113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/h/default.html HttpExceptionRequest Request { host = "" port = 80 secure = False requestHeaders = [] path = "/" queryString = "?/UNC/winp-oaf- 113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/h/default.html" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 } (InvalidDestinationHost "") Error: pandoc document conversion failed with error 61 Execution halted WHP Proprietary NOTICE TO RECIPIENT OF INFORMATION:\ This e-mail may con...{{dropped:16}}
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mail man_listinfo_r-2Dhelp&d=DwIGaQ&c=wluqKIiwffOpZ6k5sqMWMBOn0vyYnlulRJmmv OXCFpM&r=j7MrcIQm2xjHa8v-2mTpmTCtKvneM2ExlYvnUWbsByY&m=uBce0mQRO8wdLXO 8BDTtjk4R92KVzpjtkQ-NqYiAHCo&s=W5iLmdkyVAbq4AQuAsTYsadWBk1jduptKOZLR25 jPWo&e= PLEASE do read the posting guide https://urldefense.proofpoint.com/v2/url?u=http-3A__www.R-2Dproject.or g_posting-2Dguide.html&d=DwIGaQ&c=wluqKIiwffOpZ6k5sqMWMBOn0vyYnlulRJmm vOXCFpM&r=j7MrcIQm2xjHa8v-2mTpmTCtKvneM2ExlYvnUWbsByY&m=uBce0mQRO8wdLX O8BDTtjk4R92KVzpjtkQ-NqYiAHCo&s=5V2OtH149c6MxDhlirX-Yd-v8uuEuVYih9DRq- ZmBF8&e= and provide commented, minimal, self-contained, reproducible code.
-- Ege Rubak, Associate Professor, Department of Mathematical Sciences, Aalborg University Skjernvej 4A, 9220 Aalborg East, Denmark Phone: (+45)99408861 Mobile: (+45)30230252 Email: rubak at math.aau.dk NOTICE TO RECIPIENT OF INFORMATION: This e-mail may contain confidential or privileged information. If you think you have received this e-mail in error, please advise the sender by reply e-mail and then delete this e-mail immediately. This e-mail may also contain protected health information (PHI) with information about sensitive medical conditions, including, but not limited to, treatment for substance use disorders, behavioral health, HIV/AIDS, or pregnancy. This type of information may be protected by various federal and/or state laws which prohibit any further disclosure without the express written consent of the person to whom it pertains or as otherwise permitted by law. Any unauthorized further disclosure may be considered a violation of federal and/or state law. A general authorization for the release of medical or other information may NOT be sufficient consent for release of this type of information. Thank you. Aetna
1 day later
Hello all.
I am still struggling with this issue.
It appears that new installations are going to local drive.
# #Test 05/13/2020
# install.packages("abjutils")
# package ?abjutils? successfully unpacked and MD5 sums checked
#
# The downloaded binary packages are in
# C:\Users\A436798\AppData\Local\Temp\RtmpCuXNJn\downloaded_packages
However, when I run .libPaths() it indicates our UNC path
[1] "\\\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library"
Is there a way for me to change this myself in my instance of R?
Thank you.
WHP
Proprietary
-----Original Message-----
From: Ege Rubak <rubak at math.aau.dk>
Sent: Tuesday, May 12, 2020 7:43 AM
To: Poling, William <PolingW at aetna.com>; r-help at r-project.org
Subject: [EXTERNAL] Re: [R] Help with R-Markdown please
**** External Email - Use Caution ****
Looks like your files are on a Windows network drive (UNC path). I have experienced many problems with this on a Windows laptop from work. If at all possible you should avoid this. As an absolute minimum make sure your R library (collection of installed packages) is on the local file system and not a UNC path. If you are lucky this could be enough to make things work.
You can check your library location(s) with the command .libPaths() in an R session.
Good luck.
Ege
On Tue, 2020-05-12 at 10:15 +0000, Poling, William via R-help wrote:
#UPDATED 05/05/2020 #RStudio Version Version 1.2.1335 need this one--> 1.2.5019 sessionInfo() # R version 4.0.0 Patched (2020-05-03 r78349) #Platform: x86_64-w64-mingw32/x64 (64-bit) #Running under: Windows 10 x64 (build 17763) Good morning. This is the first time I have tried RMarkdown on new laptop with new employer. I am not sure how to go about fixing this problem below? Would someone please advise course of action. Thank you. WHP processing file: Member-Geo-Location-Test-V1.Rmd |.......... | 14% ordinary text without R code |.................... | 29% label: unnamed-chunk-1 (with options) List of 1 $ echo: logi FALSE |.............................. | 43% ordinary text without R code |........................................ | 57% label: setup (with options) List of 2 $ include: logi FALSE $ warning: logi FALSE |.................................................. | 71% ordinary text without R code |............................................................ | 86% label: Table1 (with options) List of 2 $ echo : logi FALSE $ results: chr "asis" |.................................................................... ..| 100% inline R code fragments output file: Member-Geo-Location-Test-V1.knit.md "C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS Member- Geo-Location-Test-V1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output Member-Geo-Location-Test-V1.html --email-obfuscation none --self- contained --standalone --section-divs --template "\\winp-oaf- 113\FldrRedir_1$\A436798\Data\R\R- 4.0.0patched\library\rmarkdown\rmd\h\default.html" --no-highlight -- variable highlightjs=1 --variable "theme:bootstrap" --include-in- header "C:\Users\A436798\AppData\Local\Temp\RtmpSajZla\rmarkdown- str2ae846253313.html" --mathjax --variable "mathjax-url: https://urldefense.proofpoint.com/v2/url?u=https-3A__mathjax.rstudio.c om_latest_MathJax.js-3Fconfig-3DTeX-2DAMS-2DMML-5FHTMLorMML&d=DwIGaQ&c =wluqKIiwffOpZ6k5sqMWMBOn0vyYnlulRJmmvOXCFpM&r=j7MrcIQm2xjHa8v-2mTpmTC tKvneM2ExlYvnUWbsByY&m=uBce0mQRO8wdLXO8BDTtjk4R92KVzpjtkQ-NqYiAHCo&s=S MNU_B--j9FvBKh-0u1NG5RHd7AtLkvyVsi9ybyUwYU&e= " --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/lua/latex-div.lua" Could not fetch http://?/UNC/winp-oaf- 113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/h/default.html HttpExceptionRequest Request { host = "" port = 80 secure = False requestHeaders = [] path = "/" queryString = "?/UNC/winp-oaf- 113/FldrRedir_1$/A436798/Data/R/R- 4.0.0patched/library/rmarkdown/rmd/h/default.html" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 } (InvalidDestinationHost "") Error: pandoc document conversion failed with error 61 Execution halted WHP Proprietary NOTICE TO RECIPIENT OF INFORMATION:\ This e-mail may con...{{dropped:16}}
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mail man_listinfo_r-2Dhelp&d=DwIGaQ&c=wluqKIiwffOpZ6k5sqMWMBOn0vyYnlulRJmmv OXCFpM&r=j7MrcIQm2xjHa8v-2mTpmTCtKvneM2ExlYvnUWbsByY&m=uBce0mQRO8wdLXO 8BDTtjk4R92KVzpjtkQ-NqYiAHCo&s=W5iLmdkyVAbq4AQuAsTYsadWBk1jduptKOZLR25 jPWo&e= PLEASE do read the posting guide https://urldefense.proofpoint.com/v2/url?u=http-3A__www.R-2Dproject.or g_posting-2Dguide.html&d=DwIGaQ&c=wluqKIiwffOpZ6k5sqMWMBOn0vyYnlulRJmm vOXCFpM&r=j7MrcIQm2xjHa8v-2mTpmTCtKvneM2ExlYvnUWbsByY&m=uBce0mQRO8wdLX O8BDTtjk4R92KVzpjtkQ-NqYiAHCo&s=5V2OtH149c6MxDhlirX-Yd-v8uuEuVYih9DRq- ZmBF8&e= and provide commented, minimal, self-contained, reproducible code.
-- Ege Rubak, Associate Professor, Department of Mathematical Sciences, Aalborg University Skjernvej 4A, 9220 Aalborg East, Denmark Phone: (+45)99408861 Mobile: (+45)30230252 Email: rubak at math.aau.dk NOTICE TO RECIPIENT OF INFORMATION: This e-mail may contain confidential or privileged information. If you think you have received this e-mail in error, please advise the sender by reply e-mail and then delete this e-mail immediately. This e-mail may also contain protected health information (PHI) with information about sensitive medical conditions, including, but not limited to, treatment for substance use disorders, behavioral health, HIV/AIDS, or pregnancy. This type of information may be protected by various federal and/or state laws which prohibit any further disclosure without the express written consent of the person to whom it pertains or as otherwise permitted by law. Any unauthorized further disclosure may be considered a violation of federal and/or state law. A general authorization for the release of medical or other information may NOT be sufficient consent for release of this type of information. Thank you. Aetna
On 2020-05-13 18:46 +0000, Poling, William via R-help wrote:
Hello all.
I am still struggling with this issue.
It appears that new installations are going
to local drive.
# #Test 05/13/2020
# install.packages("abjutils")
# package ?abjutils? successfully unpacked and MD5 sums checked
#
# The downloaded binary packages are in
# C:\Users\A436798\AppData\Local\Temp\RtmpCuXNJn\downloaded_packages
However, when I run .libPaths() it
indicates our UNC path
[1] "\\\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library"
Is there a way for me to change this myself
in my instance of R?
Dear William, Perhaps you could try to set the variable R_LIBS_USER to some local folder. I do not know how to do this on Windows, but there seems to be some guys in this rstudio discussion thread that came to some sort of a conclusion: https://community.rstudio.com/t/help-regarding-package-installation-renviron-rprofile-r-libs-r-libs-site-and-r-libs-user-oh-my/13888/8 Since long ago, I have had this line in my ~/.zshrc.local :) [ -e /usr/bin/Rscript ] && R_LIBS_USER=`Rscript -e 'cat(Sys.getenv("R_LIBS_USER"))'` Best, Rasmus
Hi Rasmus, thank you I will see if this is something I can do without IT admin access. In the mean time I have reloaded rmarkdown. To local package ?rmarkdown? successfully unpacked and MD5 sums checked The downloaded binary packages are in C:\Users\A436798\AppData\Local\Temp\RtmpYjSy7G\downloaded_packages library(rmarkdown) But R is still looking for it in : " Could not fetch http://?/UNC/winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/h/default.html" More recently I have installed other pkgs for the first time use and they have gone to local like above for rmarkdown and I have used functions from them so they are being searched for correctly I guess? Very confusing. Thank you for your response Sir! WHP "C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS Member-Geo-Location-Test-V1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output Member-Geo-Location-Test-V1.html --email-obfuscation none --self-contained --standalone --section-divs --template "\\winp-oaf-113\FldrRedir_1$\A436798\Data\R\R-4.0.0patched\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:bootstrap" --include-in-header "C:\Users\A436798\AppData\Local\Temp\RtmpglP9GJ\rmarkdown-str314c55414a00.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/lua/latex-div.lua" output file: Member-Geo-Location-Test-V1.knit.md Could not fetch http://?/UNC/winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/h/default.html HttpExceptionRequest Request { host = "" port = 80 secure = False requestHeaders = [] path = "/" queryString = "?/UNC/winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/h/default.html" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 } (InvalidDestinationHost "") Error: pandoc document conversion failed with error 61 Execution halted WHP Proprietary -----Original Message----- From: Rasmus Liland <jral at posteo.no> Sent: Wednesday, May 13, 2020 2:10 PM To: Poling, William <PolingW at aetna.com> Cc: r-help at r-project.org Subject: [EXTERNAL] Re: [R] Help with R-Markdown please **** External Email - Use Caution ****
On 2020-05-13 18:46 +0000, Poling, William via R-help wrote:
Hello all.
I am still struggling with this issue.
It appears that new installations are going to local drive.
# #Test 05/13/2020
# install.packages("abjutils")
# package ?abjutils? successfully unpacked and MD5 sums checked # #
The downloaded binary packages are in #
C:\Users\A436798\AppData\Local\Temp\RtmpCuXNJn\downloaded_packages
However, when I run .libPaths() it
indicates our UNC path
[1] "\\\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library"
Is there a way for me to change this myself in my instance of R?
Dear William, Perhaps you could try to set the variable R_LIBS_USER to some local folder. I do not know how to do this on Windows, but there seems to be some guys in this rstudio discussion thread that came to some sort of a conclusion: https://urldefense.proofpoint.com/v2/url?u=https-3A__community.rstudio.com_t_help-2Dregarding-2Dpackage-2Dinstallation-2Drenviron-2Drprofile-2Dr-2Dlibs-2Dr-2Dlibs-2Dsite-2Dand-2Dr-2Dlibs-2Duser-2Doh-2Dmy_13888_8&d=DwIDaQ&c=wluqKIiwffOpZ6k5sqMWMBOn0vyYnlulRJmmvOXCFpM&r=j7MrcIQm2xjHa8v-2mTpmTCtKvneM2ExlYvnUWbsByY&m=q_5fam9luSaeNgs-KOUZS-w-YAVaPzQdZgIlejBCDFA&s=NWDnltFH8cjC-pj6K08lWXC1FjfFcyY1mueSZnor9Ng&e= Since long ago, I have had this line in my ~/.zshrc.local :) [ -e /usr/bin/Rscript ] && R_LIBS_USER=`Rscript -e 'cat(Sys.getenv("R_LIBS_USER"))'` Best, Rasmus NOTICE TO RECIPIENT OF INFORMATION: This e-mail may contain confidential or privileged information. If you think you have received this e-mail in error, please advise the sender by reply e-mail and then delete this e-mail immediately. This e-mail may also contain protected health information (PHI) with information about sensitive medical conditions, including, but not limited to, treatment for substance use disorders, behavioral health, HIV/AIDS, or pregnancy. This type of information may be protected by various federal and/or state laws which prohibit any further disclosure without the express written consent of the person to whom it pertains or as otherwise permitted by law. Any unauthorized further disclosure may be considered a violation of federal and/or state law. A general authorization for the release of medical or other information may NOT be sufficient consent for release of this type of information. Thank you. Aetna
On 2020-05-13 19:27 +0000, Poling, William wrote:
if this is something I can do without IT admin access.
Hi! O.T. on laptops: Also, perhaps it is easier to find another laptop. There seems to be some great ThinkPads readily available anywhere around the U.S., like an X61 or X220 or something, at least that is my impression from various Facebook groups ... I mean if it is easier for you to complete your work on another machine where you have admin access ... just for making a rmarkdown presentation or something, not for working with the sensitive insurance data ... Best, Rasmus
I have R on personal laptop for consultative purposes from time to time, however, I cannot move data, confidentiality constraints, as you can imagine. I have initiated another IT ticket with organization, I think I will get to the bottom of this at some point. Thank you. WHP Proprietary -----Original Message----- From: Rasmus Liland <jral at posteo.no> Sent: Wednesday, May 13, 2020 2:50 PM To: Poling, William <PolingW at aetna.com> Cc: r-help at r-project.org Subject: [EXTERNAL] Re: Re: [R] Help with R-Markdown please **** External Email - Use Caution ****
On 2020-05-13 19:27 +0000, Poling, William wrote:
if this is something I can do without IT admin access.
Hi! O.T. on laptops: Also, perhaps it is easier to find another laptop. There seems to be some great ThinkPads readily available anywhere around the U.S., like an X61 or X220 or something, at least that is my impression from various Facebook groups ... I mean if it is easier for you to complete your work on another machine where you have admin access ... just for making a rmarkdown presentation or something, not for working with the sensitive insurance data ...
Best,
Rasmus
NOTICE TO RECIPIENT OF INFORMATION:\ This e-mail may con...{{dropped:16}}
On 2020-05-13 19:54 +0000, Poling, William wrote:
I have R on personal laptop for consultative purposes from time to time, however, I cannot move data, confidentiality constraints, as you can imagine. I have initiated another IT ticket with organization, I think I will get to the bottom of this at some point.
Great, I hope you get to the bottom of this! ??????