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relsurv package
2 messages · Giulia Barbati, Brian Ripley
On Thu, 11 Sep 2008, Giulia Barbati wrote:
Thank you. But the problem with the "relsurv" package remains: when I try to use the function "rsmul" following the package example, it give me an error (Error in nrow(x) : object "x" not found).
What did the maintainer say when you asked (see the posting guide)?
You didn't give a reproducible example: here is my attempt to make
yours reproducible in a legible way):
library(relsurv)
data(rdata); data(slopop)
fit <-rsmul(Surv(time,cens) ~ sex + as.factor(agegr) +
ratetable(age=age*365.24,sex=sex,year=year),
ratetable = slopop, data = rdata)
And that works in
sessionInfo()
R version 2.7.2 (2008-08-25) x86_64-unknown-linux-gnu locale: LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=C;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] splines stats graphics grDevices utils datasets methods [8] base other attached packages: [1] relsurv_1.4 survival_2.34-1 loaded via a namespace (and not attached): [1] tools_2.7.2 So, please do follow the posting guide: it looks like the problem is local to you.
There are perhaps others packages to fit relative survival models ? Giulia ----- Original Message ---- From: Prof Brian Ripley <ripley at stats.ox.ac.uk> To: Yihui Xie <xieyihui at gmail.com> Cc: Giulia Barbati <g.barbati at yahoo.com>; r-help at r-project.org Sent: Wednesday, September 10, 2008 11:44:43 AM Subject: Re: [R] relsurv package On Wed, 10 Sep 2008, Yihui Xie wrote:
For the second question, try something like:
strptime('12/4/1996','%M/%d/%Y')
[1] "1996-09-04 00:12:00" # only date?
as.Date(strptime('12/4/1996','%M/%d/%Y'))
[1] "1996-09-04"
Why not
as.Date('12/4/1996', format = '%m/%d/%Y')
[1] "1996-12-04" ? (And note the typo in your solution and hence incorrect answer.)
Yihui On Wed, Sep 10, 2008 at 4:22 PM, Giulia Barbati <g.barbati at yahoo.com>
wrote:
Dear R-users, I have a couple of questions about the relsurv package: 1) when I try to run the example: fit <-rsmul(Surv(time,cens)~sex+as.factor(agegr)+ratetable(age=age*365.24,sex=sex,year
=year),ratetable=slopop,data=rdata)
with the datasets in the package (rdata and slopop) it gives me an
error:
Error in nrow(x) : object "x" not found 2) If I have a date format like:"6/17/1997 " "9/10/1990 " "12/4/1996 "
how
to convert it in the Rdate format required by ratetable? Thank you very much for help, Giulia
-- Yihui Xie <xieyihui at gmail.com> Phone: +86-(0)10-82509086 Fax: +86-(0)10-82509086 Mobile: +86-15810805877 Homepage: http://www.yihui.name School of Statistics, Room 1037, Mingde Main Building, Renmin University of China, Beijing, 100872, China
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Brian D. Ripley,? ? ? ? ? ? ? ? ? ripley at stats.ox.ac.uk Professor of Applied Statistics,? http://www.stats.ox.ac.uk/~ripley/ University of Oxford,? ? ? ? ? ? Tel:? +44 1865 272861 (self) 1 South Parks Road,? ? ? ? ? ? ? ? ? ? +44 1865 272866 (PA) Oxford OX1 3TG, UK? ? ? ? ? ? ? ? Fax:? +44 1865 272595
Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595