I suddenly started getting the error message below. Not sure why.? If I type intalled.packages() it shows Matrix and lme4 installed.? Can someone tell what's going on and what I need to do to remedy the problem?? I'm running on a Linux box. ? ? ? ? ? ? Loading required package: Matrix Loading required package: lattice Error in dyn.load(file, DLLpath = DLLpath, ...) : ? function 'cholmod_l_start' not provided by package 'Matrix' Error: package/namespace load failed for ?lme4? Error: package/namespace load failed for ?lme4?
Error message
6 messages · Duncan Murdoch, Scott Raynaud, R. Michael Weylandt
On 28/08/2012 10:31 AM, Scott Raynaud wrote:
I suddenly started getting the error message below. Not sure why. If I type intalled.packages() it shows Matrix and lme4 installed. Can someone tell what's going on and what I need to do to remedy the problem? I'm running on a Linux box. Loading required package: Matrix Loading required package: lattice Error in dyn.load(file, DLLpath = DLLpath, ...) : function 'cholmod_l_start' not provided by package 'Matrix' Error: package/namespace load failed for ?lme4? Error: package/namespace load failed for ?lme4?
I would guess you are using incompatible versions. Is R up to date? are both Matrix and lme4 up to date? (If you posted sessionInfo() we'd know this...) Duncan Murdoch
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Here's the sessinoInfo().? I didn't do the upgrade and I don't know how to interpret the output.
sessionInfo()
R version 2.15.1 (2012-06-22) Platform: x86_64-pc-linux-gnu (64-bit) locale: ?[1] LC_CTYPE=en_US.UTF-8????????? LC_NUMERIC=C???????????????? ?[3] LC_TIME=en_US.UTF-8?????????? LC_COLLATE=en_US.UTF-8?????? ?[5] LC_MONETARY=en_US.UTF-8??? ???LC_MESSAGES=en_US.UTF-8????? ?[7] LC_PAPER=en_US.UTF-8????????? LC_NAME=en_US.UTF-8????????? ?[9] LC_ADDRESS=en_US.UTF-8??????? LC_TELEPHONE=en_US.UTF-8???? [11] LC_MEASUREMENT=en_US.UTF-8??? LC_IDENTIFICATION=en_US.UTF-8 attached base packages: [1] stats???? graphics? grDevices utils???? datasets? methods?? base???? other attached packages: [1] Matrix_1.0-6?? lattice_0.20-6 MASS_7.3-19??? rkward_0.5.6? loaded via a namespace (and not attached): [1] grid_2.15.1?? nlme_3.1-104? stats4_2.15.1 tools_2.15.1 ? ----- Original Message ----- From: Duncan Murdoch <murdoch.duncan at gmail.com> To: Scott Raynaud <scott.raynaud at yahoo.com> Cc: "r-help at r-project.org" <r-help at r-project.org> Sent: Tuesday, August 28, 2012 10:40 AM Subject: Re: [R] Error message
On 28/08/2012 10:31 AM, Scott Raynaud wrote:
I suddenly started getting the error message below. Not sure why.? If I type intalled.packages() it shows Matrix and lme4 installed.? Can someone tell what's going on and what I need to do to remedy the problem?? I'm running on a Linux box. ? ? ? ? ? ? Loading required package: Matrix Loading required package: lattice Error in dyn.load(file, DLLpath = DLLpath, ...) : ? ? function 'cholmod_l_start' not provided by package 'Matrix' Error: package/namespace load failed for ?lme4? Error: package/namespace load failed for ?lme4?
I would guess you are using incompatible versions.? Is R up to date?? are both Matrix and lme4 up to date? (If you posted sessionInfo() we'd know this...) Duncan Murdoch
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
It all looks up to date to me. The only one we can't see is lme4
(because it won't load) so could you also give us
installed.packages()[c("lme4","nlme","Matrix"),c(2,3,12)]
Beyond that, can you give your linux distro and installation details?
It might be necessary to punt this to the R-Debian or R-Fedora lists
if there starts to seem something fishy upstream.
Cheers,
Michael
On Tue, Aug 28, 2012 at 1:42 PM, Scott Raynaud <scott.raynaud at yahoo.com> wrote:
Here's the sessinoInfo(). I didn't do the upgrade and I don't know how to interpret the output.
sessionInfo()
R version 2.15.1 (2012-06-22) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=en_US.UTF-8 [9] LC_ADDRESS=en_US.UTF-8 LC_TELEPHONE=en_US.UTF-8 [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] Matrix_1.0-6 lattice_0.20-6 MASS_7.3-19 rkward_0.5.6 loaded via a namespace (and not attached): [1] grid_2.15.1 nlme_3.1-104 stats4_2.15.1 tools_2.15.1 ----- Original Message ----- From: Duncan Murdoch <murdoch.duncan at gmail.com> To: Scott Raynaud <scott.raynaud at yahoo.com> Cc: "r-help at r-project.org" <r-help at r-project.org> Sent: Tuesday, August 28, 2012 10:40 AM Subject: Re: [R] Error message On 28/08/2012 10:31 AM, Scott Raynaud wrote:
I suddenly started getting the error message below.
Not sure why. If I type intalled.packages() it
shows Matrix and lme4 installed. Can someone tell
what's going on and what I need to do to remedy the
problem? I'm running on a Linux box.
Loading required package: Matrix
Loading required package: lattice
Error in dyn.load(file, DLLpath = DLLpath, ...) :
function 'cholmod_l_start' not provided by package 'Matrix'
Error: package/namespace load failed for ?lme4?
Error: package/namespace load failed for ?lme4?
I would guess you are using incompatible versions. Is R up to date? are both Matrix and lme4 up to date? (If you posted sessionInfo() we'd know this...) Duncan Murdoch
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Here's the info Michael Weylandt requested:
installed.packages()[c("lme4","nlme","Matrix"),c(2,3,12)]
?????? LibPath?????????????????? Version?????? Built?? lme4?? "/usr/lib/R/site-library" "0.999375-40" "2.13.1" nlme?? "/usr/lib/R/library"????? "3.1-104"???? "2.15.0" Matrix "/usr/lib/R/library" ?????"1.0-6"?????? "2.15.0" Looks like I have lme4 for version 2.13 rather than 2.15.? Am I reading this right?? I didn't install this and I'm not a Linux person so someone will have to tell me the command to obtain the Linux information requested.? Then maybe I can figure whether to go to the Debian board or not. ----- Original Message ----- From: Duncan Murdoch <murdoch.duncan at gmail.com> To: Scott Raynaud <scott.raynaud at yahoo.com> Cc: "r-help at r-project.org" <r-help at r-project.org> Sent: Tuesday, August 28, 2012 10:40 AM Subject: Re: [R] Error message
On 28/08/2012 10:31 AM, Scott Raynaud wrote:
I suddenly started getting the error message below. Not sure why.? If I type intalled.packages() it shows Matrix and lme4 installed.? Can someone tell what's going on and what I need to do to remedy the problem?? I'm running on a Linux box. ? ? ? ? ? ? Loading required package: Matrix Loading required package: lattice Error in dyn.load(file, DLLpath = DLLpath, ...) : ? ? function 'cholmod_l_start' not provided by package 'Matrix' Error: package/namespace load failed for ?lme4? Error: package/namespace load failed for ?lme4?
I would guess you are using incompatible versions.? Is R up to date?? are both Matrix and lme4 up to date? (If you posted sessionInfo() we'd know this...) Duncan Murdoch
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
On Wed, Aug 29, 2012 at 8:11 AM, Scott Raynaud <scott.raynaud at yahoo.com> wrote:
Here's the info Michael Weylandt requested:
installed.packages()[c("lme4","nlme","Matrix"),c(2,3,12)]
LibPath Version Built lme4 "/usr/lib/R/site-library" "0.999375-40" "2.13.1" nlme "/usr/lib/R/library" "3.1-104" "2.15.0" Matrix "/usr/lib/R/library" "1.0-6" "2.15.0" Looks like I have lme4 for version 2.13 rather than 2.15. Am I reading this right? I didn't install this and I'm not a Linux person so someone will have to tell me the command to obtain the Linux information requested. Then maybe I can figure whether to go to the Debian board or not.
Yes, it does look like lme4 is rather out of date and I hope that
should solve your problem: install.packages("lme4") should clear that
up.
However, it's not a terrible idea to just give your whole library a
good spring cleaning (if you have the time) with a solid
update.packages(checkBuilt = TRUE, ask = FALSE)
# Check all packages for having new versions on CRAN or having been
built under an older version of R
# ask = FALSE means you don't have to manually approve each update
Cheers,
Michael
----- Original Message ----- From: Duncan Murdoch <murdoch.duncan at gmail.com> To: Scott Raynaud <scott.raynaud at yahoo.com> Cc: "r-help at r-project.org" <r-help at r-project.org> Sent: Tuesday, August 28, 2012 10:40 AM Subject: Re: [R] Error message On 28/08/2012 10:31 AM, Scott Raynaud wrote:
I suddenly started getting the error message below.
Not sure why. If I type intalled.packages() it
shows Matrix and lme4 installed. Can someone tell
what's going on and what I need to do to remedy the
problem? I'm running on a Linux box.
Loading required package: Matrix
Loading required package: lattice
Error in dyn.load(file, DLLpath = DLLpath, ...) :
function 'cholmod_l_start' not provided by package 'Matrix'
Error: package/namespace load failed for ?lme4?
Error: package/namespace load failed for ?lme4?
I would guess you are using incompatible versions. Is R up to date? are both Matrix and lme4 up to date? (If you posted sessionInfo() we'd know this...) Duncan Murdoch
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.