Knitr R - how to draw plot exactly at place of plot function call in output document?

Hi Michu,

it is not I problem I am familiar with, sorry. Maybe someone else on this
list or at the knirt google group can help you further.

Best,
Ulrik

Hello,

HTML looks much nicer :) ... but still problem is not solved :/ still
having mixed sections and plots.

Thank you for your advice,
Michu

2016-06-06 10:04 GMT+02:00 Ulrik Stervbo <ulrik.stervbo at gmail.com>:

Hi Michu,

What document type do you generate? I usually make just html and have no
problems. If you create a pdf, please remember this is done through LaTeX
and your problem could arise from the floats of LaTeX.

For other output I have no idea.

Hope this helps
Ulrik

Michu Kom <michu.kom at gmail.com> schrieb am Mo., 6. Juni 2016 09:41:

My R script run with Knitr generates a statistic summary of electrode
pairs
accompanied with plots. The problem is that knitr does not render plots
in
correct sections. In section for pair A knitr do not wait for plot and
start to evaluate code for output summary for pair B. So in section B
knitr
places plot from section A among printed output summary for pair B.

My function analizePair calculates some statistics and print them out. I
call a ezPlot function inside analizePair function.

knitr::opts_chunk$set(fig.show = 'asis') # 'hold' option is not proper
for my needs
for(pair in pairsLabels)
    {
        print("----------")
        print("Analysing single pair of electrodes...")
        print("----------")
        print(pair)

        analizePair(pairLabel = pair)

        print("----------")
        print("Analysing pair finished.")
        print("----------")
    }

I also tried to put Sys.sleep(2) after analizePair, but it do not solve
the
problem.

How to force knitr/R to wait until plot is generated and put before
starting next section (next iteration of for loop) ?

        [[alternative HTML version deleted]]

______________________________________________
R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

I would echo the suggestion that the knitr Google group or stackexchange.com would be better than this list for this question.  I also suggest that you look at http://yihui.name/knitr/demo/child/ and make a reproducible example if you decide to ask for more help in one of those forums.
Sent from my phone. Please excuse my brevity.

On June 6, 2016 10:51:36 PM PDT, Ulrik Stervbo <ulrik.stervbo at gmail.com> wrote:
>Hi Michu,
>
>it is not I problem I am familiar with, sorry. Maybe someone else on
>this
>list or at the knirt google group can help you further.
>
>Best,
>Ulrik
>
>On Mon, 6 Jun 2016 at 10:36 Michu Kom <michu.kom at gmail.com> wrote:
>
>> Hello,
>>
>> HTML looks much nicer :) ... but still problem is not solved :/ still
>> having mixed sections and plots.
>>
>> Thank you for your advice,
>> Michu
>>
>> 2016-06-06 10:04 GMT+02:00 Ulrik Stervbo <ulrik.stervbo at gmail.com>:
>>
>>> Hi Michu,
>>>
>>> What document type do you generate? I usually make just html and
>have no
>>> problems. If you create a pdf, please remember this is done through
>LaTeX
>>> and your problem could arise from the floats of LaTeX.
>>>
>>> For other output I have no idea.
>>>
>>> Hope this helps
>>> Ulrik
>>>
>>> Michu Kom <michu.kom at gmail.com> schrieb am Mo., 6. Juni 2016 09:41:
>>>
>>>> My R script run with Knitr generates a statistic summary of
>electrode
>>>> pairs
>>>> accompanied with plots. The problem is that knitr does not render
>plots
>>>> in
>>>> correct sections. In section for pair A knitr do not wait for plot
>and
>>>> start to evaluate code for output summary for pair B. So in section
>B
>>>> knitr
>>>> places plot from section A among printed output summary for pair B.
>>>>
>>>> My function analizePair calculates some statistics and print them
>out. I
>>>> call a ezPlot function inside analizePair function.
>>>>
>>>> knitr::opts_chunk$set(fig.show = 'asis') # 'hold' option is not
>proper
>>>> for my needs
>>>> for(pair in pairsLabels)
>>>>     {
>>>>         print("----------")
>>>>         print("Analysing single pair of electrodes...")
>>>>         print("----------")
>>>>         print(pair)
>>>>
>>>>         analizePair(pairLabel = pair)
>>>>
>>>>         print("----------")
>>>>         print("Analysing pair finished.")
>>>>         print("----------")
>>>>     }
>>>>
>>>> I also tried to put Sys.sleep(2) after analizePair, but it do not
>solve
>>>> the
>>>> problem.
>>>>
>>>> How to force knitr/R to wait until plot is generated and put before
>>>> starting next section (next iteration of for loop) ?
>>>>
>>>>         [[alternative HTML version deleted]]
>>>>
>>>> ______________________________________________
>>>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>> PLEASE do read the posting guide
>>>> http://www.R-project.org/posting-guide.html
>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>
>>>
>>
>
>	[[alternative HTML version deleted]]
>
>______________________________________________
>R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.

	[[alternative HTML version deleted]]