An embedded and charset-unspecified text was scrubbed... Name: not available URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20110508/df41bbcf/attachment.pl>
Error in AnnotationDbi package - makeProbePackage
3 messages · Helga Garcia, Martin Morgan
An embedded and charset-unspecified text was scrubbed... Name: not available URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20110508/5e6d22af/attachment.pl>
On 05/08/2011 02:15 PM, Helga Garcia wrote:
Dear all, We have developed our own Affymetrix chip (Custom Express Array, PM-only with two species). I want to analyse the data with the limma package, but for that I need to built my own CDF package, probe package and built the filters to analyse one specie or another. I'm using the makeProbePackage available in the AnnotationDbi (for a R-2.13.0) but I got the following error message: Error in rep(NA, max(pm1, mm1, pm2, mm2)) : invalid 'times' argument I already tried an old version of R-2.9.1 with a package matchprobes (that is no longer update for R-2.13.0) but the same error occurs. Does anyone knows how could I overcome this problem?
Hi Helga -- Please ask this question on the Bioconductor mailing list, where you will get expert advice. http://bioconductor.org/help/mailing-list/ Be sure that your packages are up-to-date http://bioconductor.org/install/ and that you include the output of sessionInfo() in your post. Martin
Thank you very much for your attention. Best Regards, Helga
Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793