Speed up plotting to MSWindows graphics window

Hello,

I am working on a project analysing the performance of motor-vehicles 
through messages logged over a CAN bus.

I am using R 2.12 on Windows XP and 7

I am currently plotting the data in R, overlaying 5 or more plots of 
data, logged at 1kHz, (using plot.ts() and par(new = TRUE)).
The aim is to be able to pan, zoom in and out and get values from the 
plotted graph using a custom Qt interface that is used as a front end to 
R.exe (all this works).
The plot is drawn by R directly to the windows graphic device.

The data is imported from a .csv file (typically around 100MB) to a matrix.
(timestamp, message ID, byte0, byte1, ..., byte7)
I then separate this matrix into several by message ID (dimensions are 
in the order of 8cols, 10^6 rows)

The panning is done by redrawing the plots, shifted by a small amount. 
So as to view a window of data from a second to a minute long that can 
travel the length of the logged data.

My problem is that, the redrawing of the plots whilst panning is too 
slow when dealing with this much data.
i.e.: I can see the last graphs being drawn to the screen in the 
half-second following the view change.
I need a fluid change from one view to the next.

My question is this:
Are there ways to speed up the plotting on the MSWindows display?
By reducing plotted point densities to *sensible* values?
Using something other than plot.ts() - is the lattice package faster?
I don't need publication quality plots, they can be rougher...

I have tried:
-Using matrices instead of dataframes - (works for calculations but not 
enough for plots)
-increasing the max usable memory (max-mem-size) - (no change)
-increasing the size of the pointer protection stack (max-ppsize) - (no 
change)
-deleting the unnecessary leftover matrices - (no change)
-I can't use lines() instead of plot() because of the very  different 
scales (rpm-10000, flags -1to3)

I am going to do some resampling of the logged data to reduce the vector 
sizes.
(removal of *less* important data and use of window.ts())

But I am currently running out of ideas...
So if sombody could point out something, I would be greatfull.

Thanks,

Jonathan Gabris

Date: Wed, 27 Apr 2011 11:16:26 +0200
From: jonathan at k-m-p.nl
To: r-help at r-project.org
Subject: [R] Speed up plotting to MSWindows graphics window

Hello,

I am working on a project analysing the performance of motor-vehicles
through messages logged over a CAN bus.

I am using R 2.12 on Windows XP and 7

I am currently plotting the data in R, overlaying 5 or more plots of
data, logged at 1kHz, (using plot.ts() and par(new = TRUE)).
The aim is to be able to pan, zoom in and out and get values from the
plotted graph using a custom Qt interface that is used as a front end to
R.exe (all this works).
The plot is drawn by R directly to the windows graphic device.

The data is imported from a .csv file (typically around 100MB) to a matrix.
(timestamp, message ID, byte0, byte1, ..., byte7)
I then separate this matrix into several by message ID (dimensions are
in the order of 8cols, 10^6 rows)

The panning is done by redrawing the plots, shifted by a small amount.
So as to view a window of data from a second to a minute long that can
travel the length of the logged data.

My problem is that, the redrawing of the plots whilst panning is too
slow when dealing with this much data.
i.e.: I can see the last graphs being drawn to the screen in the
half-second following the view change.
I need a fluid change from one view to the next.

My question is this:
Are there ways to speed up the plotting on the MSWindows display?
By reducing plotted point densities to *sensible* values?

Using something other than plot.ts() - is the lattice package faster?
I don't need publication quality plots, they can be rougher...

I have tried:
-Using matrices instead of dataframes - (works for calculations but not
enough for plots)
-increasing the max usable memory (max-mem-size) - (no change)
-increasing the size of the pointer protection stack (max-ppsize) - (no
change)
-deleting the unnecessary leftover matrices - (no change)
-I can't use lines() instead of plot() because of the very different
scales (rpm-10000, flags -1to3)

I am going to do some resampling of the logged data to reduce the vector
sizes.
(removal of *less* important data and use of window.ts())

But I am currently running out of ideas...
So if sombody could point out something, I would be greatfull.

Thanks,

Jonathan Gabris

Jonathan Gabris wrote:

Hello,

I am working on a project analysing the performance of motor-vehicles
through messages logged over a CAN bus.

I am using R 2.12 on Windows XP and 7

I am currently plotting the data in R, overlaying 5 or more plots of
data, logged at 1kHz, (using plot.ts() and par(new = TRUE)).
The aim is to be able to pan, zoom in and out and get values from the
plotted graph using a custom Qt interface that is used as a front end
to R.exe (all this works).
The plot is drawn by R directly to the windows graphic device.

The data is imported from a .csv file (typically around 100MB) to a
matrix.
(timestamp, message ID, byte0, byte1, ..., byte7)
I then separate this matrix into several by message ID (dimensions are
in the order of 8cols, 10^6 rows)

The panning is done by redrawing the plots, shifted by a small amount.
So as to view a window of data from a second to a minute long that can
travel the length of the logged data.

My problem is that, the redrawing of the plots whilst panning is too
slow when dealing with this much data.
i.e.: I can see the last graphs being drawn to the screen in the
half-second following the view change.
I need a fluid change from one view to the next.

My question is this:
Are there ways to speed up the plotting on the MSWindows display?
By reducing plotted point densities to *sensible* values?
Using something other than plot.ts() - is the lattice package faster?
I don't need publication quality plots, they can be rougher...

I don't think there are any ways to plot in the standard device that are
significantly faster than what you are doing if you want to see the
updates. (I think it would be substantially faster if you hid the
graphics window during the updates, but that won't suit you.)

I'd suggest plotting a subset of the data during the updates, then plot
the full dataset when it stops moving. For example, only plot a few
hundred points, even spaced through the time series.

Duncan Murdoch

I have tried:
-Using matrices instead of dataframes - (works for calculations but
not enough for plots)
-increasing the max usable memory (max-mem-size) - (no change)
-increasing the size of the pointer protection stack (max-ppsize) -
(no change)
-deleting the unnecessary leftover matrices - (no change)
-I can't use lines() instead of plot() because of the very different
scales (rpm-10000, flags -1to3)

I am going to do some resampling of the logged data to reduce the
vector sizes.
(removal of *less* important data and use of window.ts())

But I am currently running out of ideas...
So if sombody could point out something, I would be greatfull.

Thanks,

Jonathan Gabris

Date: Wed, 27 Apr 2011 14:40:23 +0200
From: jonathan at k-m-p.nl
To: r-help at r-project.org
Subject: Re: [R] Speed up plotting to MSWindows graphics window


On 27/04/2011 13:18, Mike Marchywka wrote:

Date: Wed, 27 Apr 2011 11:16:26 +0200
From:jonathan at k-m-p.nl
To:r-help at r-project.org
Subject: [R] Speed up plotting to MSWindows graphics window

Hello,

I am working on a project analysing the performance of motor-vehicles
through messages logged over a CAN bus.

I am currently plotting the data in R, overlaying 5 or more plots of
data, logged at 1kHz, (using plot.ts() and par(new = TRUE)).
The aim is to be able to pan, zoom in and out and get values from the
plotted graph using a custom Qt interface that is used as a front end to
R.exe (all this works).
The plot is drawn by R directly to the windows graphic device.

The data is imported from a .csv file (typically around 100MB) to a matrix.
(timestamp, message ID, byte0, byte1, ..., byte7)
I then separate this matrix into several by message ID (dimensions are
in the order of 8cols, 10^6 rows)

The panning is done by redrawing the plots, shifted by a small amount.
So as to view a window of data from a second to a minute long that can
travel the length of the logged data.

My problem is that, the redrawing of the plots whilst panning is too
slow when dealing with this much data.
i.e.: I can see the last graphs being drawn to the screen in the
half-second following the view change.
I need a fluid change from one view to the next.

My question is this:
Are there ways to speed up the plotting on the MSWindows display?
By reducing plotted point densities to*sensible* values?

Well, hard to know but it would help to know where all the time is going.
Usually people start complaining when VM thrashing is common but if you are
CPU limited you could try restricting the range of data you want to plot
rather than relying on the plot to just clip the largely irrelevant points
when you are zoomed in. It should not be too expensive to find the
limits either incrementally or with binary search on ordered time series.
Presumably subsetting is fast using foo[a:b,]

One thing you may want to try for change of scale is wavelet or
multi-resolution analysis. You can make a tree ( increasing memory usage
but even VM here may not be a big penalty if coherence is high ) and
display the resolution appropriate for the current scale.

I forgot to add, for plotting I use a command similar to:

plot.ts(timestampVector, dataVector, xlim=c(a,b))

a and b are timestamps from timestampVector

Is the xlim parameter sufficient for limiting the scope of the plots?
Or should I subset the timeseries each time I do a plot?

The multi-resolution analysis looks interesting.
I shall spend some time finding out how to use the wavelets package.

Cheers!

Using something other than plot.ts() - is the lattice package faster?
I don't need publication quality plots, they can be rougher...

I have tried:
-Using matrices instead of dataframes - (works for calculations but not
enough for plots)
-increasing the max usable memory (max-mem-size) - (no change)
-increasing the size of the pointer protection stack (max-ppsize) - (no
change)
-deleting the unnecessary leftover matrices - (no change)
-I can't use lines() instead of plot() because of the very different
scales (rpm-10000, flags -1to3)

I am going to do some resampling of the logged data to reduce the vector
sizes.
(removal of*less* important data and use of window.ts())

But I am currently running out of ideas...
So if sombody could point out something, I would be greatfull.

Thanks,

Jonathan Gabris

[[alternative HTML version deleted]]

Hello,

I am working on a project analysing the performance of motor-vehicles
through messages logged over a CAN bus.

I am using R 2.12 on Windows XP and 7

I am currently plotting the data in R, overlaying 5 or more plots of data,
logged at 1kHz, (using plot.ts() and par(new = TRUE)).
The aim is to be able to pan, zoom in and out and get values from the
plotted graph using a custom Qt interface that is used as a front end to
R.exe (all this works).
The plot is drawn by R directly to the windows graphic device.

The data is imported from a .csv file (typically around 100MB) to a matrix.
(timestamp, message ID, byte0, byte1, ..., byte7)
I then separate this matrix into several by message ID (dimensions are in
the order of 8cols, 10^6 rows)

The panning is done by redrawing the plots, shifted by a small amount. So as
to view a window of data from a second to a minute long that can travel the
length of the logged data.

My problem is that, the redrawing of the plots whilst panning is too slow
when dealing with this much data.
i.e.: I can see the last graphs being drawn to the screen in the half-second
following the view change.
I need a fluid change from one view to the next.

My question is this:
Are there ways to speed up the plotting on the MSWindows display?
By reducing plotted point densities to *sensible* values?
Using something other than plot.ts() - is the lattice package faster?
I don't need publication quality plots, they can be rougher...

I have tried:
-Using matrices instead of dataframes - (works for calculations but not
enough for plots)
-increasing the max usable memory (max-mem-size) - (no change)
-increasing the size of the pointer protection stack (max-ppsize) - (no
change)
-deleting the unnecessary leftover matrices - (no change)
-I can't use lines() instead of plot() because of the very ?different scales
(rpm-10000, flags -1to3)

I am going to do some resampling of the logged data to reduce the vector
sizes.
(removal of *less* important data and use of window.ts())

But I am currently running out of ideas...
So if sombody could point out something, I would be greatfull.

Thanks,

Jonathan Gabris