Dear expeRts, I would like to find out how R computes pbinom(). A grep in the source code reveiled src/library/stats/R/distn.R:146: .External(C_pbinom, q, size, prob, lower.tail, log.p), so 'C_pbinom' refers to compiled C/C++ code loaded into R. Where can I find the source code of C_pbinom? Cheers, Marius
Where to find source of C_pbinom?
6 messages · David Winsemius, Sarah Goslee, Marius Hofert +1 more
On Aug 26, 2014, at 8:14 PM, Marius Hofert wrote:
Dear expeRts, I would like to find out how R computes pbinom(). A grep in the source code reveiled src/library/stats/R/distn.R:146: .External(C_pbinom, q, size, prob, lower.tail, log.p), so 'C_pbinom' refers to compiled C/C++ code loaded into R. Where can I find the source code of C_pbinom?
www.r-project.org/doc/Rnews/Rnews_2006-4.pdf
Pages 43-54
David Winsemius, MD Alameda, CA, USA
R FAQ 7.40 http://cran.r-project.org/doc/FAQ/R-FAQ.html#How-do-I-access-the-source-code-for-a-function_003f Sarah On Tuesday, August 26, 2014, Marius Hofert <marius.hofert at math.ethz.ch> wrote:
Dear expeRts, I would like to find out how R computes pbinom(). A grep in the source code reveiled src/library/stats/R/distn.R:146: .External(C_pbinom, q, size, prob, lower.tail, log.p), so 'C_pbinom' refers to compiled C/C++ code loaded into R. Where can I find the source code of C_pbinom? Cheers, Marius
Sarah Goslee http://www.stringpage.com http://www.sarahgoslee.com http://www.functionaldiversity.org [[alternative HTML version deleted]]
Dear Sarah, Dear David,
thanks for helping. I know the FAQ and I know the R News article, but
I still couldn't figure it out. First, pbinom calls
.External(C_pbinom,...). Grepping for C_pbinom reveals... nothing
(except the appearance in .External). Going to ./src/main/names.c
reveals "{"pbinom", do_math3, 5, 11, 3+2, {PP_FUNCALL, PREC_FN, 0}},",
so the next step is to grep for do_math3 (which also applies for
"dbeta", "pbeta",..., "qnbinom_mu"). There is a connection to pbinom
again in ./src/main/arithmetic.c (SEXP attribute_hidden do_math3):
Math3_2(args, pbinom) is called. src/library/stats/src/distn.c then
shows that "Math3_2(args, pbinom)" is called. Since we just already
grepped for Math3_2, the trip ends here.
So how can one find the source code of pbinom() in this case?
Cheers,
Marius
On Wed, Aug 27, 2014 at 7:28 AM, Sarah Goslee <sarah.goslee at gmail.com> wrote:
R FAQ 7.40 http://cran.r-project.org/doc/FAQ/R-FAQ.html#How-do-I-access-the-source-code-for-a-function_003f Sarah On Tuesday, August 26, 2014, Marius Hofert <marius.hofert at math.ethz.ch> wrote:
Dear expeRts, I would like to find out how R computes pbinom(). A grep in the source code reveiled src/library/stats/R/distn.R:146: .External(C_pbinom, q, size, prob, lower.tail, log.p), so 'C_pbinom' refers to compiled C/C++ code loaded into R. Where can I find the source code of C_pbinom? Cheers, Marius
Hi, I have not followed the e-mail trail, but if you are looking for the C source code for pbinom, then it is pbinom.c in src/nmath. HTH, Ranjan On Wed, 27 Aug 2014 08:34:11 -0400 Marius Hofert
<marius.hofert at math.ethz.ch> wrote:
Dear Sarah, Dear David,
thanks for helping. I know the FAQ and I know the R News article, but
I still couldn't figure it out. First, pbinom calls
.External(C_pbinom,...). Grepping for C_pbinom reveals... nothing
(except the appearance in .External). Going to ./src/main/names.c
reveals "{"pbinom", do_math3, 5, 11, 3+2, {PP_FUNCALL, PREC_FN, 0}},",
so the next step is to grep for do_math3 (which also applies for
"dbeta", "pbeta",..., "qnbinom_mu"). There is a connection to pbinom
again in ./src/main/arithmetic.c (SEXP attribute_hidden do_math3):
Math3_2(args, pbinom) is called. src/library/stats/src/distn.c then
shows that "Math3_2(args, pbinom)" is called. Since we just already
grepped for Math3_2, the trip ends here.
So how can one find the source code of pbinom() in this case?
Cheers,
Marius
On Wed, Aug 27, 2014 at 7:28 AM, Sarah Goslee <sarah.goslee at gmail.com> wrote:
R FAQ 7.40 http://cran.r-project.org/doc/FAQ/R-FAQ.html#How-do-I-access-the-source-code-for-a-function_003f Sarah On Tuesday, August 26, 2014, Marius Hofert <marius.hofert at math.ethz.ch> wrote:
Dear expeRts, I would like to find out how R computes pbinom(). A grep in the source code reveiled src/library/stats/R/distn.R:146: .External(C_pbinom, q, size, prob, lower.tail, log.p), so 'C_pbinom' refers to compiled C/C++ code loaded into R. Where can I find the source code of C_pbinom? Cheers, Marius
-- Sarah Goslee http://www.stringpage.com http://www.sarahgoslee.com http://www.functionaldiversity.org
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Dear Ranjan, thanks, that was what I was looking for. Somehow my 'grep' must have missed that. Cheers, Marius On Wed, Aug 27, 2014 at 8:34 AM, Marius Hofert
<marius.hofert at math.ethz.ch> wrote:
Dear Sarah, Dear David,
thanks for helping. I know the FAQ and I know the R News article, but
I still couldn't figure it out. First, pbinom calls
.External(C_pbinom,...). Grepping for C_pbinom reveals... nothing
(except the appearance in .External). Going to ./src/main/names.c
reveals "{"pbinom", do_math3, 5, 11, 3+2, {PP_FUNCALL, PREC_FN, 0}},",
so the next step is to grep for do_math3 (which also applies for
"dbeta", "pbeta",..., "qnbinom_mu"). There is a connection to pbinom
again in ./src/main/arithmetic.c (SEXP attribute_hidden do_math3):
Math3_2(args, pbinom) is called. src/library/stats/src/distn.c then
shows that "Math3_2(args, pbinom)" is called. Since we just already
grepped for Math3_2, the trip ends here.
So how can one find the source code of pbinom() in this case?
Cheers,
Marius
On Wed, Aug 27, 2014 at 7:28 AM, Sarah Goslee <sarah.goslee at gmail.com> wrote:
R FAQ 7.40 http://cran.r-project.org/doc/FAQ/R-FAQ.html#How-do-I-access-the-source-code-for-a-function_003f Sarah On Tuesday, August 26, 2014, Marius Hofert <marius.hofert at math.ethz.ch> wrote:
Dear expeRts, I would like to find out how R computes pbinom(). A grep in the source code reveiled src/library/stats/R/distn.R:146: .External(C_pbinom, q, size, prob, lower.tail, log.p), so 'C_pbinom' refers to compiled C/C++ code loaded into R. Where can I find the source code of C_pbinom? Cheers, Marius