question about function heatmap

Hi,

I am using the function heatmap(stats) to draw a microarray heatmap,
columns are samples and rows are gene features.

I did a 2D clustering during the heatmap drawing.  The features and
samples indeed cluster into several blocks both vertically and
horizontally.

I can get the index of re-ordered rows and columns after the heatmap
drawing by typing the the return variable of the heatmap function.
However, I cannot  separate these index by the the dendro tree. All
the indexes labeled at the bottom and right of the plot all jammed
together.  I cannot by looking at the plot to find where the borders
are.

Can someone help?  Essentially I want the dendro tree of the genes
which are grouped after the clustering so that, e.g., I want to check
whether genes clustered together are in the same pathway etc.

Thanks in advance.

Hi,

I am using the function heatmap(stats) to draw a microarray heatmap,
columns are samples and rows are gene features.

I did a 2D clustering during the heatmap drawing. ?The features and
samples indeed cluster into several blocks both vertically and
horizontally.

I can get the index of re-ordered rows and columns after the heatmap
drawing by typing the the return variable of the heatmap function.
However, I cannot ?separate these index by the the dendro tree. All
the indexes labeled at the bottom and right of the plot all jammed
together. ?I cannot by looking at the plot to find where the borders
are.

Can someone help? ?Essentially I want the dendro tree of the genes
which are grouped after the clustering so that, e.g., I want to check
whether genes clustered together are in the same pathway etc.

Thanks in advance.

--
Waverley @ Palo Alto