David.
>>
>> summary(coxpredictors)
> FollowUpMonths Event PCI10 N2
> Symptoms
> Min. : 0.1314 Min. :0.0000 Min. :0.0000 Min. :0.000 Min.
> :0.0000
> 1st Qu.:11.3676 1st Qu.:0.0000 1st Qu.:0.0000 1st Qu.:0.000 1st
> Qu.:1.0000
> Median :19.6797 Median :0.0000 Median :0.0000 Median :0.000 Median
> :1.0000
> Mean :23.4967 Mean :0.4472 Mean :0.3668 Mean :0.402 Mean
> :0.8241
> 3rd Qu.:32.2135 3rd Qu.:1.0000 3rd Qu.:1.0000 3rd Qu.:1.000 3rd
> Qu.:1.0000
> Max. :87.1622 Max. :1.0000 Max. :1.0000 Max. :1.000 Max.
> :1.0000
>>
>> time <- FollowUpMonths
>> event <- Event
>> X <- cbind(PCI10, N2, Symptoms)
>> summary(time)
> Min. 1st Qu. Median Mean 3rd Qu. Max.
> 0.1314 11.3700 19.6800 23.5000 32.2100 87.1600
>>
>> # cox regression model with dataname first
>> mod.coxregr.hub = function(coxpredictors)
> + {
> + coxph(Surv(time,event == 1) ~ X, method="breslow", model=TRUE)
> + }
>>
>> # cox regression model
>> coxmodel = coxph(Surv(time,event == 1) ~ X, method="breslow", model=TRUE)
>>
>> summary(coxmodel)
> Call:
> coxph(formula = Surv(time, event == 1) ~ X, model = TRUE, method =
> "breslow")
>
> n= 199, number of events= 89
>
> coef exp(coef) se(coef) z Pr(>|z|)
> XPCI10 1.3179 3.7356 0.2198 5.996 2.02e-09 ***
> XN2 0.5587 1.7485 0.2165 2.580 0.00987 **
> XSymptoms 0.8102 2.2483 0.3787 2.139 0.03241 *
> ---
> Signif. codes: 0 ?***? 0.001 ?**? 0.01 ?*? 0.05 ?.? 0.1 ? ? 1
>
> exp(coef) exp(-coef) lower .95 upper .95
> XPCI10 3.736 0.2677 2.428 5.747
> XN2 1.748 0.5719 1.144 2.673
> XSymptoms 2.248 0.4448 1.070 4.723
>
> Concordance= 0.703 (se = 0.033 )
> Rsquare= 0.216 (max possible= 0.982 )
> Likelihood ratio test= 48.42 on 3 df, p=1.73e-10
> Wald test = 48.11 on 3 df, p=2.02e-10
> Score (logrank) test = 52.96 on 3 df, p=1.867e-11
>>
>> # bootstrapping formula
>> censboot(coxpredictors, mod.coxregr.hub, R=10, sim="ordinary")
> Error in censboot(coxpredictors, mod.coxregr.hub, R = 10, sim = "ordinary")
> :
> incorrect number of subscripts on matrix
>>
>>
>
>
>
> --
> View this message in context: http://r.789695.n4.nabble.com/censboot-function-for-bootstrapping-Cox-proportional-Hazard-Model-tp4707989.html
> Sent from the R help mailing list archive at Nabble.com.
>
> ______________________________________________
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> and provide commented, minimal, self-contained, reproducible code.
David Winsemius
Alameda, CA, USA