Hello
I've downloaded the tar.gz file of the package "lme4" and when I use the
coomand:
install.packages("lme4_1.1-8.tar.gz", repos = NULL, type = "source")
appears an error that suspends the installation:
In file included from external.cpp:8:0:
predModule.h:12:23: fatal error: RcppEigen.h: No such file or directory
compilation terminated.
make: *** [external.o] Error 1
ERROR: compilation failed for package ?lme4?
* removing ?/home/aurora/R/x86_64-pc-linux-gnu-library/3.2/lme4?
Does anyone know how to fix it? Thank you very much!
My sessionInfo:
R version 3.2.1 (2015-06-18)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu precise (12.04.5 LTS)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
loaded via a namespace (and not attached):
[1] tools_3.2.1
lme4 package installation
7 messages · aurora.gonzalez at openmailbox.org, Thierry Onkelinx, Teck Kiang Tan +3 more
Have you trying installing it directly from CRAN?
install.packages("lme4")
Do you have all dependencies installed? install.packages() from CRAN will
take care of that. You repos = NULL you have to install all dependencies
manually.
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature and
Forest
team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
Kliniekstraat 25
1070 Anderlecht
Belgium
To call in the statistician after the experiment is done may be no more
than asking him to perform a post-mortem examination: he may be able to say
what the experiment died of. ~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data. ~ Roger Brinner
The combination of some data and an aching desire for an answer does not
ensure that a reasonable answer can be extracted from a given body of data.
~ John Tukey
2015-08-13 16:13 GMT+02:00 <aurora.gonzalez at openmailbox.org>:
Hello
I've downloaded the tar.gz file of the package "lme4" and when I use the
coomand:
install.packages("lme4_1.1-8.tar.gz", repos = NULL, type = "source")
appears an error that suspends the installation:
In file included from external.cpp:8:0:
predModule.h:12:23: fatal error: RcppEigen.h: No such file or directory
compilation terminated.
make: *** [external.o] Error 1
ERROR: compilation failed for package ?lme4?
* removing ?/home/aurora/R/x86_64-pc-linux-gnu-library/3.2/lme4?
Does anyone know how to fix it? Thank you very much!
My sessionInfo:
R version 3.2.1 (2015-06-18)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu precise (12.04.5 LTS)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
loaded via a namespace (and not attached):
[1] tools_3.2.1
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Hi all I have problem in installation lme4 and have tried over the past 2 days. It failed to install from the various countries.
install.packages("lme4")
Warning: unable to access index for repository http://cran.stat.nus.edu.sg/src/contrib Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/src/contrib Warning: unable to access index for repository http://cran.stat.nus.edu.sg/bin/windows/contrib/3.2 Warning message: package ?lme4? is not available (for R version 3.2.1) Teck Kiang On Thu, Aug 13, 2015 at 11:09 PM, Thierry Onkelinx <thierry.onkelinx at inbo.be
wrote:
Have you trying installing it directly from CRAN?
install.packages("lme4")
Do you have all dependencies installed? install.packages() from CRAN will
take care of that. You repos = NULL you have to install all dependencies
manually.
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature and
Forest
team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
Kliniekstraat 25
1070 Anderlecht
Belgium
To call in the statistician after the experiment is done may be no more
than asking him to perform a post-mortem examination: he may be able to say
what the experiment died of. ~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data. ~ Roger Brinner
The combination of some data and an aching desire for an answer does not
ensure that a reasonable answer can be extracted from a given body of data.
~ John Tukey
2015-08-13 16:13 GMT+02:00 <aurora.gonzalez at openmailbox.org>:
Hello
I've downloaded the tar.gz file of the package "lme4" and when I use the
coomand:
install.packages("lme4_1.1-8.tar.gz", repos = NULL, type = "source")
appears an error that suspends the installation:
In file included from external.cpp:8:0:
predModule.h:12:23: fatal error: RcppEigen.h: No such file or directory
compilation terminated.
make: *** [external.o] Error 1
ERROR: compilation failed for package ?lme4?
* removing ?/home/aurora/R/x86_64-pc-linux-gnu-library/3.2/lme4?
Does anyone know how to fix it? Thank you very much!
My sessionInfo:
R version 3.2.1 (2015-06-18)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu precise (12.04.5 LTS)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
loaded via a namespace (and not attached):
[1] tools_3.2.1
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
On 13.08.2015 22:52, Teck Kiang Tan wrote:
Hi all I have problem in installation lme4 and have tried over the past 2 days. It failed to install from the various countries.
install.packages("lme4")
Warning: unable to access index for repository http://cran.stat.nus.edu.sg/src/contrib
This mirror does not respond whn I just tried, choose another one.
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/src/contrib
This one works for me (but does not contain lme4). Perhaps also run setInternet2() before you try again in cae you need proxy settings. Best, Uwe Ligges
Warning: unable to access index for repository http://cran.stat.nus.edu.sg/bin/windows/contrib/3.2 Warning message: package ?lme4? is not available (for R version 3.2.1) Teck Kiang On Thu, Aug 13, 2015 at 11:09 PM, Thierry Onkelinx <thierry.onkelinx at inbo.be
wrote:
Have you trying installing it directly from CRAN?
install.packages("lme4")
Do you have all dependencies installed? install.packages() from CRAN will
take care of that. You repos = NULL you have to install all dependencies
manually.
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature and
Forest
team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
Kliniekstraat 25
1070 Anderlecht
Belgium
To call in the statistician after the experiment is done may be no more
than asking him to perform a post-mortem examination: he may be able to say
what the experiment died of. ~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data. ~ Roger Brinner
The combination of some data and an aching desire for an answer does not
ensure that a reasonable answer can be extracted from a given body of data.
~ John Tukey
2015-08-13 16:13 GMT+02:00 <aurora.gonzalez at openmailbox.org>:
Hello
I've downloaded the tar.gz file of the package "lme4" and when I use the
coomand:
install.packages("lme4_1.1-8.tar.gz", repos = NULL, type = "source")
appears an error that suspends the installation:
In file included from external.cpp:8:0:
predModule.h:12:23: fatal error: RcppEigen.h: No such file or directory
compilation terminated.
make: *** [external.o] Error 1
ERROR: compilation failed for package ?lme4?
* removing ?/home/aurora/R/x86_64-pc-linux-gnu-library/3.2/lme4?
Does anyone know how to fix it? Thank you very much!
My sessionInfo:
R version 3.2.1 (2015-06-18)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu precise (12.04.5 LTS)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
loaded via a namespace (and not attached):
[1] tools_3.2.1
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Thanks Uwe Ligges for the suggestion. I tried using setInternet2() but also failed. I tried for several other countries but also failed. Any other suggestion to overcome it. Thanks. Warning: unable to access index for repository http://cran.utstat.utoronto.ca/src/contrib Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/src/contrib Warning: unable to access index for repository http://cran.utstat.utoronto.ca/bin/windows/contrib/3.2 Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2 On Fri, Aug 14, 2015 at 1:29 PM, Uwe Ligges <ligges at statistik.tu-dortmund.de
wrote:
On 13.08.2015 22:52, Teck Kiang Tan wrote:
Hi all
I have problem in installation lme4 and have tried over the past 2 days.
It
failed to install from the various countries.
install.packages("lme4")
Warning: unable to access index for repository http://cran.stat.nus.edu.sg/src/contrib
This mirror does not respond whn I just tried, choose another one. Warning: unable to access index for repository
This one works for me (but does not contain lme4). Perhaps also run setInternet2() before you try again in cae you need proxy settings. Best, Uwe Ligges Warning: unable to access index for repository
http://cran.stat.nus.edu.sg/bin/windows/contrib/3.2 Warning message: package ?lme4? is not available (for R version 3.2.1) Teck Kiang On Thu, Aug 13, 2015 at 11:09 PM, Thierry Onkelinx < thierry.onkelinx at inbo.be
wrote:
Have you trying installing it directly from CRAN?
install.packages("lme4")
Do you have all dependencies installed? install.packages() from CRAN will
take care of that. You repos = NULL you have to install all dependencies
manually.
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature
and
Forest
team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
Kliniekstraat 25
1070 Anderlecht
Belgium
To call in the statistician after the experiment is done may be no more
than asking him to perform a post-mortem examination: he may be able to
say
what the experiment died of. ~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data. ~ Roger Brinner
The combination of some data and an aching desire for an answer does not
ensure that a reasonable answer can be extracted from a given body of
data.
~ John Tukey
2015-08-13 16:13 GMT+02:00 <aurora.gonzalez at openmailbox.org>:
Hello
I've downloaded the tar.gz file of the package "lme4" and when I use the
coomand:
install.packages("lme4_1.1-8.tar.gz", repos = NULL, type = "source")
appears an error that suspends the installation:
In file included from external.cpp:8:0:
predModule.h:12:23: fatal error: RcppEigen.h: No such file or directory
compilation terminated.
make: *** [external.o] Error 1
ERROR: compilation failed for package ?lme4?
* removing ?/home/aurora/R/x86_64-pc-linux-gnu-library/3.2/lme4?
Does anyone know how to fix it? Thank you very much!
My sessionInfo:
R version 3.2.1 (2015-06-18)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu precise (12.04.5 LTS)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
loaded via a namespace (and not attached):
[1] tools_3.2.1
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
2 days later
Hi try tu put line setInternet2(TRUE) into your Rprofile.site file (located in etc directory of R installation) and restart R. Cheers Petr
-----Original Message----- From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Teck Kiang Tan Sent: Friday, August 14, 2015 11:21 AM To: Uwe Ligges Cc: r-help at r-project.org; aurora.gonzalez at openmailbox.org Subject: Re: [R] lme4 package installation Thanks Uwe Ligges for the suggestion. I tried using setInternet2() but also failed. I tried for several other countries but also failed. Any other suggestion to overcome it. Thanks. Warning: unable to access index for repository http://cran.utstat.utoronto.ca/src/contrib Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/src/contrib Warning: unable to access index for repository http://cran.utstat.utoronto.ca/bin/windows/contrib/3.2 Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2 On Fri, Aug 14, 2015 at 1:29 PM, Uwe Ligges <ligges at statistik.tu- dortmund.de
wrote:
On 13.08.2015 22:52, Teck Kiang Tan wrote:
Hi all I have problem in installation lme4 and have tried over the past 2
days.
It
failed to install from the various countries.
install.packages("lme4")
Warning: unable to access index for repository http://cran.stat.nus.edu.sg/src/contrib
This mirror does not respond whn I just tried, choose another one. Warning: unable to access index for repository
This one works for me (but does not contain lme4). Perhaps also run setInternet2() before you try again in cae you need proxy settings. Best, Uwe Ligges Warning: unable to access index for repository
http://cran.stat.nus.edu.sg/bin/windows/contrib/3.2 Warning message: package ?lme4? is not available (for R version 3.2.1) Teck Kiang On Thu, Aug 13, 2015 at 11:09 PM, Thierry Onkelinx < thierry.onkelinx at inbo.be
wrote:
Have you trying installing it directly from CRAN?
install.packages("lme4")
Do you have all dependencies installed? install.packages() from
CRAN
will take care of that. You repos = NULL you have to install all dependencies manually. ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance Kliniekstraat 25 1070 Anderlecht Belgium To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may
be
able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure
that
a reasonable answer can be extracted from a given body of data. ~ John Tukey 2015-08-13 16:13 GMT+02:00 <aurora.gonzalez at openmailbox.org>: Hello
I've downloaded the tar.gz file of the package "lme4" and when I
use the
coomand:
install.packages("lme4_1.1-8.tar.gz", repos = NULL, type =
"source")
appears an error that suspends the installation:
In file included from external.cpp:8:0:
predModule.h:12:23: fatal error: RcppEigen.h: No such file or
directory compilation terminated.
make: *** [external.o] Error 1
ERROR: compilation failed for package ?lme4?
* removing ?/home/aurora/R/x86_64-pc-linux-gnu-library/3.2/lme4?
Does anyone know how to fix it? Thank you very much!
My sessionInfo:
R version 3.2.1 (2015-06-18)
Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu
precise (12.04.5 LTS)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
loaded via a namespace (and not attached):
[1] tools_3.2.1
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting- guide.html and provide commented, minimal, self-contained, reproducible code.
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try tu put line setInternet2(TRUE) into your Rprofile.site file (located in etc directory of R installation) and restart R.
You may well need to specify the utils library, as follows, to make sure the setInternet2 function is found at run time: utils::setInternet2() S Ellison ******************************************************************* This email and any attachments are confidential. Any use, copying or disclosure other than by the intended recipient is unauthorised. If you have received this message in error, please notify the sender immediately via +44(0)20 8943 7000 or notify postmaster at lgcgroup.com and delete this message and any copies from your computer and network. LGC Limited. Registered in England 2991879. Registered office: Queens Road, Teddington, Middlesex, TW11 0LY, UK