Skip to content

Dendogram from RNAseq read count to show correlation between biological replicate using R

3 messages · Yogesh Gupta, Bert Gunter, Vivek Das

Yogesh Gupta
# 
Dear all,

I need to make dendogram from read count in a csv file across 34 samples
including biological replicate.

Please share R code or package to do this.

Do I also need to normalized read count before using read data?

Thanks
Bert Gunter
# 
We don't do your work for you. Read the posting guide (below) to find
what we will do. If you are unwilling or unable to do your work
yourself -- including learning R-- you should consider finding someone
else who will.

-- Cheers,
Bert
Bert Gunter

"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Fri, Jun 9, 2017 at 5:22 AM, Yogesh Gupta <yogesh2cute at gmail.com> wrote:
Vivek Das
# 
Yogesh please try to search in google or stackoverfolow or for that matter
Biostars. These are pretty simple linear programming tools specially
needing just required package and function once you parse the matrix or in
your case .csv file. If you find particular problem when your code runs an
error we can help. Without trying anything no one will do anything for you.
Try framing your query and search in google in the above-mentioned websites
you will find your answers. All the queries you have asked have been
addressed in multiple websites and bioinformatics or SO blogs. Try to learn
and practice R about how to work with it and then understand a standard
workflow used in RNA-Seq, and follow some Bioconductor tools there. You
will find your answers. Thanks

----------------------------------------------------------

Vivek Das
On Fri, Jun 9, 2017 at 2:22 PM, Yogesh Gupta <yogesh2cute at gmail.com> wrote: