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Problem building packages from source (WIN32)

5 messages · Peter Dalgaard, Brian Ripley, Gavin Simpson

Original
Gavin Simpson
# 
Dear List,

I have been experimenting with building packages from sources, having
previously relied upon the binaries.

I downloaded and installed all the tools suggested in
http://www.stats.ox.ac.uk/pub/Rtools/ , including ActivePerl 5.6.1.631.
I also downloaded the HTML Help workshop exe and installed it.  During
install though, a message popped up to say that I had a newer version of
the workshop installed, clicking OK allowed the installation to proceed
and end with a message saying that the installation had completed.  I
placed all the relevant info in my path, sh.exe in c:\bin, etc, and
edited MkRules to reflect the location of the HTML Help Workshop.

I was able to make libR.a without any problems following
readme.packages.  I am using rw1040, under Win2000(SP2), having
installed R from the SetupR binary.

To test things were working I tried to install some packages from CRAN.
I downloaded the tar files from CRAN and unpacked them into
R-HOME\rw1040\src\gnuwin32.  I then ran Rcmd INSTALL on the directory
containing the package.

This is where I started to have problems:

The following is the output from Rcmd INSTALL when trying to install
package vegan:

C:\R\rw1040\src\gnuwin32>Rcmd INSTALL C:\R\rw1040\src\gnuwin32\vegan

make: Entering directory `/cygdrive/c/R/rw1040/src/gnuwin32'
make DLLNM= \
  -C C:/R/rw1040/src/gnuwin32/vegan PKG=vegan RHOME=C:/R/rw1040
RLIB=C:/R/rw1040
/library \
  -f C:/R/rw1040/src/gnuwin32/MakePkg
make[1]: Entering directory `/cygdrive/c/R/rw1040/src/gnuwin32/vegan'
---------- Making package vegan ------------
mkdir -p C:/R/rw1040/library/vegan
cp -r   ./INDEX  ./TITLE ./WhatsNew.txt C:/R/rw1040/library/vegan/
  adding build stamp to DESCRIPTION
  making DLL
make[2]: Entering directory
`/cygdrive/c/R/rw1040/src/gnuwin32/vegan/src'
make[3]: `libR.a' is up to date.
make[2]: Leaving directory `/cygdrive/c/R/rw1040/src/gnuwin32/vegan/src'
  DLL made

mkdir -p C:/R/rw1040/library/vegan/libs
cp src/vegan.dll C:/R/rw1040/library/vegan/libs/vegan.dll
  installing R files
  installing data files
  installing man source files
make[1]: Leaving directory `/cygdrive/c/R/rw1040/src/gnuwin32/vegan'
make -C ./help RHOME=C:/R/rw1040 PKGDIR=C:/R/rw1040/src/gnuwin32
RLIB=C:/R/rw104
0/library help-vegan
make[1]: Entering directory `/cygdrive/c/R/rw1040/src/gnuwin32/help'
PERL5LIB=C:/R/rw1040/share/perl perl
../../../share/perl/build-help-windows.pl
 -txt -html -example -latex C:/R/rw1040/src/gnuwin32/vegan
C:/R/rw1040/library
 >>> Building/Updating help pages for package `vegan'
     Formats: text html latex example
  decorana                          text    html    latex   example
  decostand                         text    html    latex   example
  diversity                         text    html    latex   example
  initMDS                           text    html    latex   example
  postMDS                           text    html    latex   example
  procrustes                        text    html    latex   example
  rankindex                         text    html    latex   example
  varechem                          text    html    latex   example
  vectorfit                         text    html    latex   example
  vegdist                           text    html    latex   example
  wascores                          text    html    latex   example
make[1]: Leaving directory `/cygdrive/c/R/rw1040/src/gnuwin32/help'
make -C ./help RHOME=C:/R/rw1040 PKGDIR=C:/R/rw1040/src/gnuwin32
RLIB=C:/R/rw104
0/library contents-vegan
make[1]: Entering directory `/cygdrive/c/R/rw1040/src/gnuwin32/help'
PERL5LIB=C:/R/rw1040/share/perl perl \
  ../../../share/perl/Rd2contents.pl \
  --os=windows -o C:/R/rw1040/library/vegan/CONTENTS
C:/R/rw1040/src/gnuwin32/ve
gan
cat C:/R/rw1040/library/*/CONTENTS >
C:/R/rw1040/doc/html/search/index.txt
PERL5LIB=C:/R/rw1040/share/perl perl
../../../share/perl/build-help-windows.pl
-htmllists
make[1]: Leaving directory `/cygdrive/c/R/rw1040/src/gnuwin32/help'
make -C ./help RHOME=C:/R/rw1040 PKGDIR=C:/R/rw1040/src/gnuwin32
RLIB=C:/R/rw104
0/library chm-vegan
make[1]: Entering directory `/cygdrive/c/R/rw1040/src/gnuwin32/help'
PERL5LIB=C:/R/rw1040/share/perl perl
../../../share/perl/build-help-windows.pl
-chm C:/R/rw1040/src/gnuwin32/vegan C:/R/rw1040/library
 >>> Building/Updating help pages for package `vegan'
     Formats: chm
make  --no-print-directory -C C:/R/rw1040/src/gnuwin32/vegan/chm -f
C:/R/rw1040/
src/gnuwin32/help/Makefile vegan.chm
hhc vegan.hhp
make[2]: hhc: Command not found
make[2]: [vegan.chm] Error 127 (ignored)
mkdir -p C:/R/rw1040/library/vegan/chtml
cp C:/R/rw1040/src/gnuwin32/vegan/chm/vegan.chm
C:/R/rw1040/library/vegan/chtml
cp: cannot stat `C:/R/rw1040/src/gnuwin32/vegan/chm/vegan.chm': No such
file or
directory
make[1]: *** [chm-vegan] Error 1
make[1]: Leaving directory `/cygdrive/c/R/rw1040/src/gnuwin32/help'
make: *** [pkg-vegan] Error 2
make: Leaving directory `/cygdrive/c/R/rw1040/src/gnuwin32'
*** Installation of vegan failed ***

It seems to be getting as far as doing the compiled HTML help and then
not finding a particular file.  I'm am at a loss as to how to continue.
Can anyone suggest what I am doing wrong, or suggest what to do next?

I have tried this with a number of package sources from CRAN, and all
fail at the same point, with the same message.  Because the CHM thing
seemed to be the problem, I have installed the HTMLHelp workshop into a
different directory on my disk, altered MkRules and tried Rcmd again,
but the same thing happens.

Many thanks for your help,

Gavin Simpson


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Peter Dalgaard
# 
Gavin Simpson <gavin.simpson at ucl.ac.uk> writes:
This looks like a problem with your PATH setting. It expects to be
able to invoke the help compiler from a command line with just "hhc".
Set in autoexec.bat (if that still exists in W2000).
Brian Ripley
# 
The short answer, from readme.packages,

  All of these need to be installed and in your path, and the
  appropriate environment variables set.

Clearly hhc is not in your path.
The setting in MkRules is only used to find the C header files.
Gavin Simpson
# 
Many thanks to Peter Dalgaard and Brian Ripley for there incredibly
quick and accurate identification of my error.

I hadn't put the path to hhc in my path, hence it wouldn't run.  Having
fixed this, things seem to run alright.  Is there a way to check to see
if everything has worked as required, or is there something more I
should do after Rcmd INSTALL pkg as a matter of course?  There still
seems to be an error (reported as ignored), and I wondered if this can
be checked?

<snip>
Created c:\R\rw1040\src\gnuwin32\vegan\chm\vegan.chm, 42,50
Compression decreased file by 19,366 bytes.
make[2]: [vegan.chm] Error 1 (ignored)
mkdir -p C:/R/rw1040/library/vegan/chtml
cp C:/R/rw1040/src/gnuwin32/vegan/chm/vegan.chm C:/R/rw1040
make[1]: Leaving directory `/cygdrive/c/R/rw1040/src/gnuwin
make: Leaving directory `/cygdrive/c/R/rw1040/src/gnuwin32'

By the way, as Uwe Ligges indicated in a private email, putting the path
information in autoexec.bat won't work under Win2000.  The way to do it
is in Control Panel > System > (click) Advanced Tab > Environmental
Variables... , choose path from the System Variables window and click
Edit..., and the add the new path information in the textbox, separating
entries with a semi colon ";"

Cheers

Gav

-----Original Message-----
From: pd at pubhealth.ku.dk [mailto:pd at pubhealth.ku.dk] On Behalf Of Peter
Dalgaard BSA
Sent: 17 January 2002 17:02
To: gavin.simpson
Cc: r-help
Subject: Re: [R] Problem building packages from source (WIN32)


Gavin Simpson <gavin.simpson at ucl.ac.uk> writes:
This looks like a problem with your PATH setting. It expects to be able
to invoke the help compiler from a command line with just "hhc". Set in
autoexec.bat (if that still exists in W2000).
Brian Ripley
#
On Thu, 17 Jan 2002, Gavin Simpson wrote:

            

      
      
      
    

        
That's a bug in hhc.exe which always returns a non-zero error code.
That's documented in the help/Makefile, as I recall.

Double-click on the foo.chm installed and check it works is the only test.
But in hundreds of tests I have never seen hhc complete and produce an
invalid .chm.

I always run make pkgcheck-foo after Rcmd INSTALL foo, which checks all
the examples.

            

      
      
      
    

        
Or since you must run this from a terminal (commands prompt or whatever)
you can have a small batch file which sets the path as needed for building
R packages.  That's what I do, as otherwise the path can get too long.

            

      
      
      
    

        
but only parse the first 262 characters (which explains a problem Marc
Feldesman had with HHW a long time ago).