Hi I am trying install the XML package on R 3.3.0 on RHEL. After it complained that the curl library was missing and we installed it, it continues to fail the linking step: gcc -m64 -std=gnu99 -shared -L/usr/lib64/R/lib -ldl -lpthread -lc -lrt -lcurl -lidn -lssh2 -lssh2 -lssl -lcrypto -lssl -lcrypto -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lldap -lz -lrt -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -lm -lz -lxml2 -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lldap It is not clear which package is meant to provide the ldap library, although I can see I library that may be appropriate it is not referred to as libldap as such. Should I be creating a symbolic link to the library or something like that? Please help! Regards David das Neves This e-mail is classified C2 - Vodacom Restricted - Information to be used inside Vodacom but it may be shared with authorised partners. ?This e-mail is sent on the Terms and Conditions that can be accessed by Clicking on this link https://webmail.vodacom.co.za/tc/default.html "
R XML package on RHEL
4 messages · Das Neves, David, Vodacom South Africa, Ista Zahn
As far as I know you only need libxml and libxml2-devel. Do you have those installed? --Ista On Wed, Dec 7, 2016 at 8:00 AM, Das Neves, David, Vodacom South Africa
<David.DasNeves at vcontractor.co.za> wrote:
Hi I am trying install the XML package on R 3.3.0 on RHEL. After it complained that the curl library was missing and we installed it, it continues to fail the linking step: gcc -m64 -std=gnu99 -shared -L/usr/lib64/R/lib -ldl -lpthread -lc -lrt -lcurl -lidn -lssh2 -lssh2 -lssl -lcrypto -lssl -lcrypto -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lldap -lz -lrt -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -lm -lz -lxml2 -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lldap It is not clear which package is meant to provide the ldap library, although I can see I library that may be appropriate it is not referred to as libldap as such. Should I be creating a symbolic link to the library or something like that? Please help! Regards David das Neves This e-mail is classified C2 - Vodacom Restricted - Information to be used inside Vodacom but it may be shared with authorised partners. ?This e-mail is sent on the Terms and Conditions that can be accessed by Clicking on this link https://webmail.vodacom.co.za/tc/default.html "
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Hi Thanks for your reply. I do have them installed it seems: [dasneved at drdsv01zatcrh ~]$ yum list installed | grep xml2 *Note* Red Hat Network repositories are not listed below. You must run this command as root to access RHN repositories. libxml2.x86_64 2.7.6-21.el6_8.1 @RHEL6.8-Server-P1-Jul2016-x86_64 libxml2-devel.x86_64 2.7.6-21.el6_8.1 @RHEL6.8-Server-P1-Oct2016-x86_64 I have a .so for ldap on the server, maybe I should try symlinking to it? I can't find anything called libldap without a version number, so maybe that is the problem? [dasneved at drdsv01zatcrh ~]$ find / -name '*libldap*' 2>/dev/null /lib64/libldap-2.4.so.2 /lib64/libldap_r-2.4.so.2 /lib64/libldap_r-2.4.so.2.10.3 /lib64/libldap-2.4.so.2.10.3 /opt/apps/oracle/product/11.2.0/client64/lib/libldapjclnt11.so /opt/apps/oracle/product/11.2.0/client64/lib/libldapjclnt11.a /opt/apps/oracle/product/11.2.0/client64/lib/libldapclnt11.a /opt/apps/oracle/product/11.2.0/dbhome/lib/libldapjclnt11.so /opt/apps/oracle/product/11.2.0/dbhome/lib/libldapjclnt11.a /opt/apps/oracle/product/11.2.0/dbhome/lib/libldapclnt11.a /usr/lib64/libreoffice/program/libldapbe2lo.so /usr/lib64/libldap-2.3.so.0.2.31 /usr/lib64/libldap_r-2.3.so.0 /usr/lib64/libldap_r-2.3.so.0.2.31 /usr/lib64/sasl2/libldapdb.so /usr/lib64/sasl2/libldapdb.so.2.0.23 /usr/lib64/sasl2/libldapdb.so.2 /usr/lib64/libldap-2.3.so.0 /usr/lib64/thunderbird/libldap60.so Regards David -----Original Message----- From: Ista Zahn [mailto:istazahn at gmail.com] Sent: 07 December 2016 08:53 PM To: Das Neves, David, Vodacom South Africa Cc: r-help at R-project.org Subject: Re: [R] R XML package on RHEL As far as I know you only need libxml and libxml2-devel. Do you have those installed? --Ista
On Wed, Dec 7, 2016 at 8:00 AM, Das Neves, David, Vodacom South Africa <David.DasNeves at vcontractor.co.za> wrote:
Hi I am trying install the XML package on R 3.3.0 on RHEL. After it complained that the curl library was missing and we installed it, it continues to fail the linking step: gcc -m64 -std=gnu99 -shared -L/usr/lib64/R/lib -ldl -lpthread -lc -lrt -lcurl -lidn -lssh2 -lssh2 -lssl -lcrypto -lssl -lcrypto -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lldap -lz -lrt -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -lm -lz -lxml2 -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lldap It is not clear which package is meant to provide the ldap library, although I can see I library that may be appropriate it is not referred to as libldap as such. Should I be creating a symbolic link to the library or something like that? Please help! Regards David das Neves This e-mail is classified C2 - Vodacom Restricted - Information to be used inside Vodacom but it may be shared with authorised partners. ???This e-mail is sent on the Terms and Conditions that can be accessed by Clicking on this link https://webmail.vodacom.co.za/tc/default.html "
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
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I don't know, the only thing with ldap in the name that I have installed is "openldap". On Wed, Dec 7, 2016 at 2:21 PM, Das Neves, David, Vodacom South Africa
<David.DasNeves at vcontractor.co.za> wrote:
Hi Thanks for your reply. I do have them installed it seems: [dasneved at drdsv01zatcrh ~]$ yum list installed | grep xml2 *Note* Red Hat Network repositories are not listed below. You must run this command as root to access RHN repositories. libxml2.x86_64 2.7.6-21.el6_8.1 @RHEL6.8-Server-P1-Jul2016-x86_64 libxml2-devel.x86_64 2.7.6-21.el6_8.1 @RHEL6.8-Server-P1-Oct2016-x86_64 I have a .so for ldap on the server, maybe I should try symlinking to it? I can't find anything called libldap without a version number, so maybe that is the problem? [dasneved at drdsv01zatcrh ~]$ find / -name '*libldap*' 2>/dev/null /lib64/libldap-2.4.so.2 /lib64/libldap_r-2.4.so.2 /lib64/libldap_r-2.4.so.2.10.3 /lib64/libldap-2.4.so.2.10.3 /opt/apps/oracle/product/11.2.0/client64/lib/libldapjclnt11.so /opt/apps/oracle/product/11.2.0/client64/lib/libldapjclnt11.a /opt/apps/oracle/product/11.2.0/client64/lib/libldapclnt11.a /opt/apps/oracle/product/11.2.0/dbhome/lib/libldapjclnt11.so /opt/apps/oracle/product/11.2.0/dbhome/lib/libldapjclnt11.a /opt/apps/oracle/product/11.2.0/dbhome/lib/libldapclnt11.a /usr/lib64/libreoffice/program/libldapbe2lo.so /usr/lib64/libldap-2.3.so.0.2.31 /usr/lib64/libldap_r-2.3.so.0 /usr/lib64/libldap_r-2.3.so.0.2.31 /usr/lib64/sasl2/libldapdb.so /usr/lib64/sasl2/libldapdb.so.2.0.23 /usr/lib64/sasl2/libldapdb.so.2 /usr/lib64/libldap-2.3.so.0 /usr/lib64/thunderbird/libldap60.so Regards David -----Original Message----- From: Ista Zahn [mailto:istazahn at gmail.com] Sent: 07 December 2016 08:53 PM To: Das Neves, David, Vodacom South Africa Cc: r-help at R-project.org Subject: Re: [R] R XML package on RHEL As far as I know you only need libxml and libxml2-devel. Do you have those installed? --Ista On Wed, Dec 7, 2016 at 8:00 AM, Das Neves, David, Vodacom South Africa <David.DasNeves at vcontractor.co.za> wrote:
Hi I am trying install the XML package on R 3.3.0 on RHEL. After it complained that the curl library was missing and we installed it, it continues to fail the linking step: gcc -m64 -std=gnu99 -shared -L/usr/lib64/R/lib -ldl -lpthread -lc -lrt -lcurl -lidn -lssh2 -lssh2 -lssl -lcrypto -lssl -lcrypto -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lldap -lz -lrt -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -lm -lz -lxml2 -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lldap It is not clear which package is meant to provide the ldap library, although I can see I library that may be appropriate it is not referred to as libldap as such. Should I be creating a symbolic link to the library or something like that? Please help! Regards David das Neves This e-mail is classified C2 - Vodacom Restricted - Information to be used inside Vodacom but it may be shared with authorised partners. ?This e-mail is sent on the Terms and Conditions that can be accessed by Clicking on this link https://webmail.vodacom.co.za/tc/default.html "
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
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