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Information on the number of CPU's
7 messages · Brian Ripley, Markus Schmidberger, tolga.i.uzuner at jpmorgan.com +1 more
On Tue, 9 Sep 2008, tolga.i.uzuner at jpmorgan.com wrote:
Dear R Users, I am on Windows XP SP2 platform, using R version 2.7.2 . I was wondering if there is a way to find out, within R, the number of CPU's on my machine ? I would use this information to set the number of nodes in a cluster, depending on the machine. Sys.info() and .Platform do not carry this information.
Correct, since a) R does not make use of more than 1. b) It is really not portable, and not even well-defined. (How many CPUs has a hyperthreaded dual Xeon? Some say 2, some say 4. Do you want CPUs or cores? If this is a virtualized OS, is the physical number or the logical number?) In the case of Windows, how depends on the Windows version. The w32api (XP or later) call GetNativeSystemInfo will tell you the number of CPUs, for some (unstated) definition of 'CPU'. Later versions have GetLogicalProcessorInformation, which can give the number of cores.
Thanks in advance, Tolga Uzuner
Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
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Hi Tolga, I am not sure why ls() is showing only "args" and "fun". But x is at the nodes. Try this: clusterEvalQ(cl,x<-x+3) [[1]] [1] 4 [[2]] [1] 4 clusterCall(cl,function()x+5) [[1]] [1] 9 [[2]] [1] 9 Best Markus tolga.i.uzuner at jpmorgan.com schrieb:
Dear R Users, Apologies for a somewhat basic cluster question. I am trying to come to grips with how variables are instantiated within the environment of each node in a cluster. When I run the following code, I expect to see the variable "x" in the environment of each node, but fail to do so. What am I doing wrong ? library(snow) noclusters<-2 cl <- makeCluster(noclusters, type = "SOCK") clusterCall(cl,ls) x<-1 clusterExport(cl,"x") clusterCall(cl,ls) #expect to see x in the environment, but get back the same result as in the call above stopCluster(cl)
library(snow)
noclusters<-2
cl <- makeCluster(noclusters, type = "SOCK")
clusterCall(cl,ls)
[[1]] [1] "args" "fun" [[2]] [1] "args" "fun"
x<-1
clusterExport(cl,"x")
clusterCall(cl,ls) #expect to see x in the environment
[[1]] [1] "args" "fun" [[2]] [1] "args" "fun"
stopCluster(cl)
Thanks in advance, Tolga Generally, this communication is for informational purposes only and it is not intended as an offer or solicitation for the purchase or sale of any financial instrument or as an official confirmation of any transaction. In the event you are receiving the offering materials attached below related to your interest in hedge funds or private equity, this communication may be intended as an offer or solicitation for the purchase or sale of such fund(s). All market prices, data and other information are not warranted as to completeness or accuracy and are subject to change without notice. Any comments or statements made herein do not necessarily reflect those of JPMorgan Chase & Co., its subsidiaries and affiliates. This transmission may contain information that is privileged, confidential, legally privileged, and/or exempt from disclosure under applicable law. If you are not the intended recipient, you are hereby notified that any disclosure, copying, distribution, or use of the information contained herein (including any reliance thereon) is STRICTLY PROHIBITED. Although this transmission and any attachments are believed to be free of any virus or other defect that might affect any computer system into which it is received and opened, it is the responsibility of the recipient to ensure that it is virus free and no responsibility is accepted by JPMorgan Chase & Co., its subsidiaries and affiliates, as applicable, for any loss or damage arising in any way from its use. If you received this transmission in error, please immediately contact the sender and destroy the material in its entirety, whether in electronic or hard copy format. Thank you. Please refer to http://www.jpmorgan.com/pages/disclosures for disclosures relating to UK legal entities. [[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Dipl.-Tech. Math. Markus Schmidberger Ludwig-Maximilians-Universit?t M?nchen IBE - Institut f?r medizinische Informationsverarbeitung, Biometrie und Epidemiologie Marchioninistr. 15, D-81377 Muenchen URL: http://ibe.web.med.uni-muenchen.de Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de Tel: +49 (089) 7095 - 4599
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ls() looks in its calling environment, which in this case would be the
internals of the snow mechnism. If you want ls of the global
environment use one of
clusterEvalQ(cl, ls())
clusterCall(cl, ls, .GlobalEnv)
luke
On Wed, 10 Sep 2008, tolga.i.uzuner at jpmorgan.com wrote:
Many thanks. Yes, weird, somehow ls does not show the variables in the environment, even though they are clearly there. It would be nice to understand why that is the case, just to be clear about what is going on. Thanks Markus, Tolga Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de> 10/09/2008 10:45 Please respond to schmidb at ibe.med.uni-muenchen.de To tolga.i.uzuner at jpmorgan.com cc r-help at r-project.org Subject Re: [R] cluster/snow question Hi Tolga, I am not sure why ls() is showing only "args" and "fun". But x is at the nodes. Try this: clusterEvalQ(cl,x<-x+3) [[1]] [1] 4 [[2]] [1] 4 clusterCall(cl,function()x+5) [[1]] [1] 9 [[2]] [1] 9 Best Markus tolga.i.uzuner at jpmorgan.com schrieb:
Dear R Users, Apologies for a somewhat basic cluster question. I am trying to come to grips with how variables are instantiated within the environment of each
node in a cluster. When I run the following code, I expect to see the variable "x" in the environment of each node, but fail to do so. What am
I
doing wrong ? library(snow) noclusters<-2 cl <- makeCluster(noclusters, type = "SOCK") clusterCall(cl,ls) x<-1 clusterExport(cl,"x") clusterCall(cl,ls) #expect to see x in the environment, but get back the
same result as in the call above stopCluster(cl)
library(snow) noclusters<-2 cl <- makeCluster(noclusters, type = "SOCK") clusterCall(cl,ls)
[[1]] [1] "args" "fun" [[2]] [1] "args" "fun"
x<-1 clusterExport(cl,"x") clusterCall(cl,ls) #expect to see x in the environment
[[1]] [1] "args" "fun" [[2]] [1] "args" "fun"
stopCluster(cl)
Thanks in advance, Tolga Generally, this communication is for informational purposes only and it is not intended as an offer or solicitation for the purchase or sale of any financial instrument or as an official confirmation of any transaction. In the event you are receiving the offering materials attached below related to your interest in hedge funds or private equity, this communication may be intended as an offer or solicitation for the purchase or sale of such fund(s). All market prices, data and other information are not warranted as to completeness or accuracy and are subject to change without notice. Any comments or statements made herein do not necessarily reflect those of JPMorgan Chase & Co., its subsidiaries and affiliates. This transmission may contain information that is privileged, confidential, legally privileged, and/or exempt from disclosure under applicable law. If you are not the intended recipient, you are hereby notified that any disclosure, copying, distribution, or use of the information contained herein (including any reliance thereon) is STRICTLY PROHIBITED. Although this transmission and any attachments are believed to be free of any virus or other defect that might affect any computer system into which it is received and opened, it is the responsibility of the recipient to ensure that it is virus free and no responsibility is accepted by JPMorgan Chase & Co., its subsidiaries and affiliates, as applicable, for any loss or damage arising in any way from its use. If you received this transmission in error, please immediately contact the sender and destroy the material in its entirety, whether in electronic or hard copy format. Thank you. Please refer to http://www.jpmorgan.com/pages/disclosures for disclosures relating to UK legal entities. [[alternative HTML version deleted]]
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Dipl.-Tech. Math. Markus Schmidberger Ludwig-Maximilians-Universit?? M??chen IBE - Institut f?? medizinische Informationsverarbeitung, Biometrie und Epidemiologie Marchioninistr. 15, D-81377 Muenchen URL: http://ibe.web.med.uni-muenchen.de Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de Tel: +49 (089) 7095 - 4599 Generally, this communication is for informational purposes only and it is not intended as an offer or solicitation for the purchase or sale of any financial instrument or as an official confirmation of any transaction. In the event you are receiving the offering materials attached below related to your interest in hedge funds or private equity, this communication may be intended as an offer or solicitation for the purchase or sale of such fund(s). All market prices, data and other information are not warranted as to completeness or accuracy and are subject to change without notice. Any comments or statements made herein do not necessarily reflect those of JPMorgan Chase & Co., its subsidiaries and affiliates. This transmission may contain information that is privileged, confidential, legally privileged, and/or exempt from disclosure under applicable law. If you are not the intended recipient, you are hereby notified that any disclosure, copying, distribution, or use of the information contained herein (including any reliance thereon) is STRICTLY PROHIBITED. Although this transmission and any attachments are believed to be free of any virus or other defect that might affect any computer system into which it is received and opened, it is the responsibility of the recipient to ensure that it is virus free and no responsibility is accepted by JPMorgan Chase & Co., its subsidiaries and affiliates, as applicable, for any loss or damage arising in any way from its use. If you received this transmission in error, please immediately contact the sender and destroy the material in its entirety, whether in electronic or hard copy format. Thank you. Please refer to http://www.jpmorgan.com/pages/disclosures for disclosures relating to UK legal entities. [[alternative HTML version deleted]]
Luke Tierney
Chair, Statistics and Actuarial Science
Ralph E. Wareham Professor of Mathematical Sciences
University of Iowa Phone: 319-335-3386
Department of Statistics and Fax: 319-335-3017
Actuarial Science
241 Schaeffer Hall email: luke at stat.uiowa.edu
Iowa City, IA 52242 WWW: http://www.stat.uiowa.edu
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