I'd like to change the way plot.hclust displays an hclust object.
Here's
a description of how it's done now, from the R documentation of
hclust:
In hierarchical cluster displays, a decision is needed at each
merge
to specify which subtree should go on the left and which on the
right.
Since, for n observations there are n-1 merges, there are
2^{(n-1)}
possible orderings for the leaves in a cluster tree, or
dendrogram.
The algorithm used in hclust is to order the subtree so that the
tighter cluster is on the left (the last, i.e. most recent, merge
of the left subtree is at a lower value than the last merge of
the
right subtree). Single observations are the tightest clusters
possible,
and merges involving two observations place them in order by
their
observation sequence number. I have a factor vector (if that's the right term) for the
observations, and
I'd like to order the display of the leaves so that leaves of the same level are grouped together as much as possible. Even something as
simple
as putting the higher average code on the left would help. I've spent some time looking at the code in rpart, but I'm having a
hard
time figuring out what I need to modify. Or maybe someone's already
done
something similar? Any help much appreciated! David Marimont NXP Data Analysis, Inc. http://www.nxpdata.com
You could look at function group.clust in contributed package maptree for possible ideas. Denis White US EPA, 200 SW 35th St, Corvallis, Oregon, 97333 USA voice: 541.754.4476, email: white.denis at epa.gov web: www.epa.gov/wed/pages/staff/white/ -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at stat.math.ethz.ch _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._