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Automatically assign symbol for statistical significance to x given value of x

3 messages · Marc Schwartz, Tormod Bøe

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Dear r-help users,

I am using Sweave and Latex to create tables with output from several
statistical test. As an example: I have a grouping variable "group"
with two levels ("x" and "y") which I compare on variables ("a" and
"b").

I have created a table in which means, standard deviations, and the
statistic and p.value resulting from a t.test is printed. The table
looks something like:

?group(x) ? ? ? ? ? ? ? ? ?group(y)
mean ? ? ? ?sd ? ? ? ?mean ? ? ?sd ? ? t-value p-value ?sig.
mean(x,a) ?sd(x,a) mean(y,a) sd(y,a) ? ?t.a ? ? ?p.a
mean(x,b) ?sd(x,b) mean(y,b) sd(y,b) ? ?t.b ? ? ?p.b

What I would like to be able to add to this table is an indication by
means of asterisks ("*") the level of significance of the p.value(s).

I am after an expression to put in column "sig." which evaluates the
p.value and prints *, ** or *** depending on it's value (e.g. if it is
less than .05 print "*", but if it is less than .01 print "**", but if
it is less than .001 print "***", else print " ").

I am able to use a simple function like if (p.value<0.5) print("*")
else print(" "),
but I have not been able to work out how to nest the "if" expressions correctly.

Any help would be greatly appreciated.

Best regards,
Tormod B?e
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On Jul 20, 2009, at 10:36 AM, Tormod B?e wrote:

            
The simple answer is to use symnum(), which is the function the  
generates the symbology for those tables in R where the 'significance  
stars' are included. For example, when printing a linear model summary  
where printCoefmat() is used. See the last example in ?symnum for more  
information.

The philosophical challenge that you will face is that a lot of people  
are not favorably disposed to the use of this symbology. So the use or  
non-use of them may be dependent upon your own feelings and those of  
the consumers of your output. See ?options and note  
'show.signif.stars', which a lot of folks, myself included, set to  
FALSE in .Rprofile.

HTH,

Marc Schwartz
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On Mon, Jul 20, 2009 at 5:47 PM, Marc Schwartz<marc_schwartz at me.com> wrote:

            
Thank you very much Marc, the symnum function worked perfectly and I
hadn't heard of it until now.

With regards to the philosophical challenge; I don't really have an
option since (most) journals (in social science) require such symbols.

Thanks again!

Best regrads,
Tormod B?e