Hi
-----Original Message----- From: Luciane Maria Pilotto [mailto:lutipilotto at yahoo.com.br] Sent: Friday, May 01, 2015 12:49 AM To: PIKAL Petr; r-help at r-project.org; John Kane Subject: Re: [R] help - hoslem.test Ok, in dropbox link below you can download the bank. (https://www.dropbox.com/s/9qrdf4mhd6tzypi/id3.rda?dl=0)
No. Not everybody is alowed to use dropbox. Try to post result of dput(id3) directly to your post. Cheers Petr
I change the script following the suggestions, but the error persists.
I used the the na.action command to delete the lost values.
#######################################################################
load("id3.rda")
attach(id3)
#transformando q13 em bin?ria (o/1)
q131<-ifelse(q13==1,0,ifelse(q13==2,1,ifelse(q13==3,1,
ifelse(q13==4,1,ifelse(q13==5,1,NA)))))
id3<-cbind(id3,q131)
id3$q131 <- as.factor(id3$q131)
str(id3)
tp1 <- glm(q131 ~ q11 + q10+q12+edcat + q08+q06+ q14, family =
binomial(link = "logit"), data=id3, na.action="na.exclude")
tp1
hoslem.test(tp1$q131, fitted(tp1), g=10)
--------------------------------------------
Em qui, 30/4/15, John Kane <jrkrideau at inbox.com> escreveu:
Assunto: Re: [R] help - hoslem.test
Para: "PIKAL Petr" <petr.pikal at precheza.cz>, "Luciane Maria Pilotto"
<lutipilotto at yahoo.com.br>, "r-help at r-project.org" <r-help at r-
project.org>
Data: Quinta-feira, 30 de Abril de 2015, 11:51
Kevin Thorpe pointed out
to me that there is a dropbox link at the very bottom of the
post that I missed. :(
I
just downloaded it, read it in and it looks fine.
John Kane
Kingston ON Canada
> -----Original
Message-----
> From: petr.pikal at precheza.cz > Sent: Thu, 30 Apr 2015 14:25:23 +0000 > To: lutipilotto at yahoo.com.br,
r-help at r-project.org
> Subject: Re: [R] help - hoslem.test > > Hi > > I agree with John > > Just small
refinements in lines
>
>> -----Original Message-----
>>> -----Original Message----- >>> From: lutipilotto at yahoo.com.br >>> Sent: Thu, 30 Apr 2015 04:24:32
-0700
>>> To: r-help at r-project.org,
jrkrideau at inbox.com
>>> Subject: RE: [R] help -
hoslem.test
>>>
>>> load("id3.rda")
>> And what is this? >> >> We do not
have access to your office or computer hard disc.
>> >> Please read
>> great-r-reproducible-example, see
?dput for sending data?
>> >> It is very unlikely anyone here can
help if we have no data.
>> >>
>>>
attach(id3)
> > Do
not use attach. It prevents from modifiyng id3.
>
>>> >>> #transformando q13 em bin?ria >>>
q131<-ifelse(q13==1,1,ifelse(q13==2,2,ifelse(q13==3,2,
>>>
ifelse(q13==4,2,ifelse(q13==5,2,NA)))))
>
> q131 <- as.numeric(cut(q13,
c(0,1.5,5)))
>
>>
x<-1:7
>> x
>
[1] 1 2 3 4 5 6 7
>> as.numeric(cut(x,
c(0,1.5,5)))
> [1] 1 2 2 2 2 NA
NA
>
>>>
id3<-cbind(id3,q131)
> > rather dangerous in case id3 is not
data.frame but matrix
>
>>> id3$q131 <-
as.factor(id3$q131)
>>> >>> tp1 <- glm(q131 ~ q11 +
q10+q12+edcat + q08+q06+ q14, family =
>>> binomial(link =
"logit"), data=id3)
>>>
tp1
>>> >>> library(ResourceSelection) >>> hoslem.test(tp1$q131, fitted(tp1),
g=10)
> > hoslem.test
expects x to be a numeric vector of observations, binary
> (0/1). > If I
understand correctly tp1$q131 have values 1, 2 or NA.
> > Cheers > Petr >
>>> >>>
>>> >>> >>>
__________________________________________________ >>> Luciane Maria Pilotto >>> Mestre e Doutoranda em Sa?de Bucal Coletiva - FO/UFRGS >>> NDE Odontologia - UNIVATES >>> Telefone: (51) 84512344 >>> >>> -------------------------------------------- >>> Em qui, 30/4/15, John Kane <jrkrideau at inbox.com> escreveu: >>> >>> Assunto: RE: [R] help - hoslem.test >>> Para: "Luciane Maria Pilotto" <lutipilotto at yahoo.com.br>, >>> r-help at r-project.org >>> Data: Quinta-feira, 30 de Abril de 2015, 7:52 >>> >>> http://stackoverflow.com/questions/5963269/how-to-make-a-great-r- >> reproducible-example >>> >>> John Kane >>> Kingston ON Canada >>> >>> >>> > -----Original Message----- >>> > From: lutipilotto at yahoo.com.br >>> > Sent: Wed, 29 Apr 2015 18:45:26 -0700 >>> > To: r-help at r-project.org >>> > Subject: [R] help - hoslem.test >>> > >>> > Hello, >>> > >>> > I'm working with >>> ordinal logistic regression model (polr) and would like >>> > to test the proportional odds assumption. >>> For this, I ran the binary >>> > logistic >>> regressions with varying cutpoints on the dependent >>> variable, as >>> > described in the following >>> commands. When running the test of Hosmer and >>> > Lemeshow (hoslem.test) for residuals gives >>> error. >>> > >>> > Thanks, >>> > Luciane >>> > >>> > >>> ______________________________________________ >>> > R-help at r-project.org >>> mailing list -- To UNSUBSCRIBE and more, see >>> > https://stat.ethz.ch/mailman/listinfo/r-help >>> > PLEASE do read the posting guide >>> > http://www.R-project.org/posting-guide.html >>> > and provide commented, minimal, >>> self-contained, reproducible code. >>> >>> ____________________________________________________________ >>> FREE ONLINE PHOTOSHARING - Share your photos >>> online with your friends and family! >>> Visit >>> http://www.inbox.com/photosharing to >>> find out more! >> >> ____________________________________________________________ >> FREE ONLINE PHOTOSHARING - Share your photos online with your friends >> and family! >> Visit http://www.inbox.com/photosharing to find out more! >> >> ______________________________________________ >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting- >> guide.html >> and provide commented, minimal, self-contained, reproducible code. > > ________________________________ > Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a jsou > ur?eny pouze jeho adres?t?m. > Jestli?e jste obdr?el(a) tento e-mail omylem, informujte laskav? > neprodlen? jeho odes?latele. 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________________________________ Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a jsou ur?eny pouze jeho adres?t?m. Jestli?e jste obdr?el(a) tento e-mail omylem, informujte laskav? neprodlen? jeho odes?latele. Obsah tohoto emailu i s p??lohami a jeho kopie vyma?te ze sv?ho syst?mu. Nejste-li zam??len?m adres?tem tohoto emailu, nejste opr?vn?ni tento email jakkoliv u??vat, roz?i?ovat, kop?rovat ?i zve?ej?ovat. Odes?latel e-mailu neodpov?d? za eventu?ln? ?kodu zp?sobenou modifikacemi ?i zpo?d?n?m p?enosu e-mailu. V p??pad?, ?e je tento e-mail sou??st? obchodn?ho jedn?n?: - vyhrazuje si odes?latel pr?vo ukon?it kdykoliv jedn?n? o uzav?en? smlouvy, a to z jak?hokoliv d?vodu i bez uveden? d?vodu. - a obsahuje-li nab?dku, je adres?t opr?vn?n nab?dku bezodkladn? p?ijmout; Odes?latel tohoto e-mailu (nab?dky) vylu?uje p?ijet? nab?dky ze strany p??jemce s dodatkem ?i odchylkou. - trv? odes?latel na tom, ?e p??slu?n? smlouva je uzav?ena teprve v?slovn?m dosa?en?m shody na v?ech jej?ch n?le?itostech. - odes?latel tohoto emailu informuje, ?e nen? opr?vn?n uzav?rat za spole?nost ??dn? smlouvy s v?jimkou p??pad?, kdy k tomu byl p?semn? zmocn?n nebo p?semn? pov??en a takov? pov??en? nebo pln? moc byly adres?tovi tohoto emailu p??padn? osob?, kterou adres?t zastupuje, p?edlo?eny nebo jejich existence je adres?tovi ?i osob? j?m zastoupen? zn?m?. This e-mail and any documents attached to it may be confidential and are intended only for its intended recipients. If you received this e-mail by mistake, please immediately inform its sender. Delete the contents of this e-mail with all attachments and its copies from your system. If you are not the intended recipient of this e-mail, you are not authorized to use, disseminate, copy or disclose this e-mail in any manner. The sender of this e-mail shall not be liable for any possible damage caused by modifications of the e-mail or by delay with transfer of the email. In case that this e-mail forms part of business dealings: - the sender reserves the right to end negotiations about entering into a contract in any time, for any reason, and without stating any reasoning. - if the e-mail contains an offer, the recipient is entitled to immediately accept such offer; The sender of this e-mail (offer) excludes any acceptance of the offer on the part of the recipient containing any amendment or variation. - the sender insists on that the respective contract is concluded only upon an express mutual agreement on all its aspects. - the sender of this e-mail informs that he/she is not authorized to enter into any contracts on behalf of the company except for cases in which he/she is expressly authorized to do so in writing, and such authorization or power of attorney is submitted to the recipient or the person represented by the recipient, or the existence of such authorization is known to the recipient of the person represented by the recipient.