[R-pkg-devel] Re :Re: Re :Re: Re :Re: package cartograflow_0.0.0.9000.tar.gz
I've seen in file xxxx the message below:
Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)??????????????? setting the option has no effect on input line 377.
Can this generate a note?
Sylvain
Le dimanche 7 avril 2019 ? 21:01:59 UTC+2, cartograflow at gmail.com <cartograflow at gmail.com> a ?crit :
Thanks!So, I've already check and I didn't see the descrption of the note in 00check.log.The only thing I can say is that there's a problem with Author.
I tried to put Authors at R and it also generates notes.
Do you have any idea?
You will find hereafter the copy of the file 00check.log.Thanks in advance
----------------* using log directory ?/home/sylvain/svn/cartograflow.Rcheck?
* using R Under development (unstable) (2019-04-04 r76316)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ?--as-cran?
* checking for file ?cartograflow/DESCRIPTION? ... OK
* this is package ?cartograflow? version ?1.0.0.0?
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: ?Sylvain Blondeau <blondeau.sylvain at yahoo.fr>?
New submission
Author field should be Authors at R.? Current value is:
? c(person("Sylvain", "Blondeau", email = "blondeau.sylvain at yahoo.fr", role = c("cre","aut")),
??????????? person("other", "other", email = "other.other at gmail.com", role = c("aut")))
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ?cartograflow? can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ?build? directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ?inst/doc? ... OK
* checking files in ?vignettes? ... OK
* checking examples ... OK
* checking for unstated dependencies in ?tests? ... OK
* checking tests ... OK
? Running ?testthat.R?
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ?inst/doc? ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
Le dimanche 7 avril 2019 ? 18:22:32 UTC+2, Duncan Murdoch <murdoch.duncan at gmail.com> a ?crit :
On 07/04/2019 12:16 p.m., cartograflow at gmail.com wrote:
Hi,Thanks to your reply and your information.?Right now it stays only one note when I've made R-devel CMD CHECK --as-cran.?So, I didn't identified this note in repertory R.check. What's file I've to check?I'd like to know if I can new submission in CRAN with one note.?Sylvain
It will be in cartograflow.Rcheck/00check.log. Duncan Murdoch
Envoy? depuis Yahoo?Mail pour Android ? ? ? Le jeu., avr. 4, 2019 ? 17:09, Ma?lle SALMON<maelle.salmon at yahoo.se> a ?crit :? ? I'd recommend reading https://r-pkgs.org/description.html#dependencies (and the rest of the book is very good as well), it'll help you understand why and how to declare dependencies. ? ? ? Den torsdag 4 april 2019 17:05:02 CEST, cartograflow at gmail.com <cartograflow at gmail.com> skrev: ? ? How I can declare the dependencies in DESCRIPTION file? ? ?depends: library(dplyr,dependencies =TRUE) Thanks Envoy? depuis Yahoo?Mail pour Android ? ? ? Le jeu., avr. 4, 2019 ? 14:42, Uwe Ligges<ligges at statistik.tu-dortmund.de> a ?crit :? .... or forgot to declare a dependency on that package in the DESCRIPTION file... Best, Uwe Ligges On 04.04.2019 13:34, Sebastian Meyer wrote:
There are probably no clairvoyants around here. So, again, without access to the up-to-date source code of your package, nobody will be able to help. "there is no package called ..." means that the given package is not installed in any of the libraries currently in use by R (see .libPaths() for the relevant paths). Maybe you have installed "dplyr" in a library used by your standard R installation, but not in any library used by your R-devel installation (which you seem to use for checking the package)? Just a wild guess. Am 04.04.19 um 13:14 schrieb cartograflow at gmail.com:
I follow up your recommendation and for the moment I didn't used "conflicted". So, I've made the nex R CMD check and I have the problem Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : ? ? ? there is no package called ?dplyr? How I can? solve this issue? Thanks in advance Le jeudi 4 avril 2019 ? 08:22:26 UTC+2, Sebastian Meyer <seb.meyer at fau.de> a ?crit : Note that output concerning masked objects are just messages which do not cause your vignette to fail. So it is not stricly necessary to start working on these conflicts now. However, looking closely at the win-builder check results (https://win-builder.r-project.org/incoming_pretest/cartograflow_0.0.0.9000_20190324_230822/Windows/00check.log), I see the following output below these messages
Warning in eval(expr, envir, enclos) : NAs introduced by coercion Quitting from lines 529-573 (cartograflow.Rmd) Error: processing vignette 'cartograflow.Rmd' failed with diagnostics: argument is of length zero
So the problem actually is in lines 529-573 of the cartograflow.Rmd
vignette (at least in the version submitted to win-builder a few weeks ago).
Running tools::buildVignette("cartograflow.Rmd") locally, I see
Error in if (horiz) { : argument is of length zero
and the subsequent traceback() shows that the error originates from
layoutLayer(title = "Professional mobility in Greater Paris", ? ? ? ? ? ? coltitle = "black", author = "Cartograflow, 2019", sources =
"Sources : data : INSEE, RP, MOBPRO, 2017 ; basemap : IGN, APUR, UMS 2414 RIATE, 2018.",
? ? ? ? ? ? scale = 0.2, tabtitle = TRUE, frame = TRUE, north(pos =
"topright"),
? ? ? ? ? ? col = "grey")
So it seems to me that the unnamed argument 'north(pos = "topright")' is wrongly matched to the "horiz" argument of layoutLayer(). Cheers, ? ? ??? Sebastian Am 04.04.19 um 07:20 schrieb cartograflow at gmail.com <mailto:cartograflow at gmail.com>:
Hi,I don't know if my explanations are clear.I tried several way to
solve this problem w/o success.?Someone have an idea ?Thanks in advance
On 2019-04-03 2:11 p.m., cartograflow at gmail.com
<mailto:cartograflow at gmail.com> wrote:
? ? ? Hi, I come back to you? because I have always the problem with
devtools::check of my package.
I used the command to check my package with R-devel : sylvain at sylvain <mailto:sylvain at sylvain>:~/svn$ bash R-devel.sh CMD
check --as-cran /home/sylvain/work/12_R_studio/package/cartograflow_0.0.0.1.tar.gz
When I start the rmd file there is a warning due to package dplyr : ? ? ????????Attaching package: 'dplyr' ? ? ????????The following objects are masked from 'package:stats': ? ? ??????????????????? filter, lag ? ? ????????The following objects are masked from 'package:base': ? ? ??????????????????? intersect, setdiff, setequal, union The solve this issue I added in rmd file, description file and the
namespace the package conflicted.
So, the package conflicted avoid to have this warning. But when I run R-devel CMD check I have a new issue that is Error in
loadNamespace...no package called ?conflicted? (see below)
Can you help me to solve this issue if tit's possible? Thanks in advance to your help ! Sylvain ----------------- Below extract of 00check.log * checking whether package ?cartograflow? can be installed ... ERROR Installation failed. See ?/home/sylvain/svn/cartograflow.Rcheck/00install.out? for details. * DONE Status: 1 ERROR, 1 NOTE Below 00install.out * installing *source* package ?cartograflow? ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck =
vI[[i]]) :
? ? ? there is no package called ?conflicted? Calls: <Anonymous> ... loadNamespace -> withRestarts ->
withOneRestart -> doWithOneRestart
Ex?cution arr?t?e ERROR: lazy loading failed for package ?cartograflow? * removing ?/home/sylvain/svn/cartograflow.Rcheck/cartograflow? ? ? ? ? Le mardi 26 mars 2019 ? 22:42:21 UTC+1, Henrik Bengtsson
<henrik.bengtsson at gmail.com <mailto:henrik.bengtsson at gmail.com>> a ?crit :
? ? ? ? ? FWIW, you should be able to reproduce at least the following NOTEs with your current R 3.5.2 and R CMD check --as-cran: * checking CRAN incoming feasibility ... NOTE Maintainer: ?cartogRaflow <cartograflow at gmail.com
<mailto:cartograflow at gmail.com>>?
New submission
Version contains large components (0.0.0.9000)
Possibly mis-spelled words in DESCRIPTION:
? ? ? flowmapping (7:41)
Author field should be Authors at R. <mailto:Authors at R.>? Current value is:
? ? ? c(person("Fran?oise", "Bahoken", email =
"francoise.bahoken at ifsttar.fr <mailto:francoise.bahoken at ifsttar.fr>",
role = c("cre","aut")),
? ? ? ? ? ? ? ? person("Sylvain", "Blondeau", email =
"blondeau.sylvain at yahoo.fr <mailto:blondeau.sylvain at yahoo.fr>", role
= c("aut"))
The Title field should be in title case. Current version is:
?thematic cartography of flows and movements?
In title case that is:
?Thematic Cartography of Flows and Movements?
Those are all classical mistakes ("we've all been there").? The
vignette errors may or may not be specific to R devel.
/Henrik
On Tue, Mar 26, 2019 at 2:29 PM cartograflow at gmail.com
<mailto:cartograflow at gmail.com>
<cartograflow at gmail.com <mailto:cartograflow at gmail.com>> wrote:
Hi,? l've made R CMD check --as-cran on rstudio 3.5.2Why I have to
use r-devel?
I confirm that I didn't received ? error message when I've made
dev_tool::check.
How can I solve my problem ? Thanks in advance Sylvain nvoy? depuis Yahoo Mail pour Android ? ? ? Le lun., mars 25, 2019 ? 23:38, Uwe
Ligges<ligges at statistik.tu-dortmund.de <mailto:ligges at statistik.tu-dortmund.de>> a ?crit :? I cannot beloeve it. But this is certainly not R-devel?
Not sure about devtools which we do not use on CRAN, but simply R CMD check --as-cran with a recent R-devel? version on the package tarball should reproduce the findings. Best, Uwe Ligges On 25.03.2019 23:12, cartograflow at gmail.com
<mailto:cartograflow at gmail.com> wrote:
Hello, I've submitted my package cartograflow and I received an email from
your teeam that it does not pass the incoming checks automatically.Debian: <https://win-builder.r-project.org/incoming_pretest/cartograflow_0.0.0.9000_20190324_230822/Debian/00check.log>
Status: 1 ERROR, 2 WARNINGs, 1 NOTE So, I've made the new check on my plateform (linux ubuntu) and the
check is OK.I used : ==> devtools::check(args =
c('--no-manual','--as-cran'))Status is :
?? R CMD check results ???????????????????????????? cartograflow
0.0.0.9000 ????
Duration: 54.6s 0 errors ? | 0 warnings ? | 0 notes ? R CMD check succeeded Can you? help me to fix the problem? Thanks in advance to your replySylvain ? ? ? ? [[alternative HTML version deleted]]
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