[R-pkg-devel] R Packages Never Finish Check

On 30 Sep 2016, at 18:52 , Duncan Murdoch <murdoch.duncan at gmail.com> wrote:

On 30/09/2016 12:24 PM, Ortega, Cameron wrote:

Hi,

When I attempt to run Check on any package, the "checking installed package size..." Check never finishes. This is across multiple versions of R and RStudio, with every package I have attempted to run, including packages confirmed to pass Check quickly and with no issues for others.

I have attempted to run Check using the following methods:
-Check under the Build tab of RStudio
-Running devtools::check() from the RStudio console
-Running R CMD check from the command line

Has anyone experienced Check failing to progress on any step, or have any ideas about what I should try next?

I've never seen that, and I run R CMD check a lot, and devtools::check sometimes.  So you're probably stuck debugging it yourself.

Do the usual debugging things:  simplify the process.  You're using devtools::check; see if the same thing happens in a terminal running R CMD check.  Depending on the answer to that, simplify the package down to almost nothing, and see if it still happens.

If you're lucky, it will only happen in devtools::check, and then you can see what it is doing that's different than what R CMD check does.  If they both give the same problem, you might need to dive into the R sources to see what "* checking installed package size ..." really does, and try running code like that independently.

Duncan Murdoch

This is my session info:
R version 3.3.1 (2016-06-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] tools_3.3.1







This is a print out from the RStudio Check:
==> devtools::check()

Updating linkedata documentation
Loading linkedata
Writing NAMESPACE
Writing linkedata.Rd
Writing linke.Rd
Setting env vars ---------------------------------------------------------------
CFLAGS  : -Wall -pedantic
CXXFLAGS: -Wall -pedantic
Building linkedata -------------------------------------------------------------
"C:/PROGRA~1/R/R-33~1.1/bin/x64/R" --no-site-file --no-environ --no-save  \
  --no-restore --quiet CMD build  \
  "C:\Users\caort\Documents\Subversion\rcode\lib\src\linkedata"  \
  --no-resave-data --no-manual

* checking for file 'C:\Users\caort\Documents\Subversion\rcode\lib\src\linkedata/DESCRIPTION' ... OK
* preparing 'linkedata':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
Removed empty directory 'linkedata/zipdta'
* looking to see if a 'data/datalist' file should be added
* building 'linkedata_0.1.0.tar.gz'

Setting env vars ---------------------------------------------------------------
_R_CHECK_CRAN_INCOMING_ : FALSE
_R_CHECK_FORCE_SUGGESTS_: FALSE
Checking linkedata -------------------------------------------------------------
"C:/PROGRA~1/R/R-33~1.1/bin/x64/R" --no-site-file --no-environ --no-save  \
  --no-restore --quiet CMD check  \
  "C:\Users\caort\AppData\Local\Temp\Rtmp8EbYiM/linkedata_0.1.0.tar.gz"  \
  --as-cran --timings --no-manual

* using log directory 'C:/Users/caort/Documents/Subversion/rcode/lib/src/linkedata.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using options '--no-manual --as-cran'
* checking for file 'linkedata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'linkedata' version '0.1.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'pvsolcalcs'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'linkedata' can be installed ... OK
* checking installed package size ...





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