Message-ID: <20240205224551.0304cb8c@Tarkus>
Date: 2024-02-05T19:47:55Z
From: Ivan Krylov
Subject: [R-pkg-devel] Bioconductor reverse dependency checks for a CRAN package
In-Reply-To: <DS7PR10MB72772BE31259003B9625B283FA7D2@DS7PR10MB7277.namprd10.prod.outlook.com>
On Tue, 30 Jan 2024 16:24:40 +0000
Martin Morgan <mtmorgan.xyz at gmail.com> wrote:
> BiocManager (the recommended way to install Bioconductor packages) at
> the end of the day does essentially install.packages(repos =
> BiocManager::repositories()), ensuring that the right versions of
> Bioconductor packages are installed for the version of R in use.
That's great to know, thanks! I think I will use BiocManager::install
for now, both because it uses the correct repositories and because it
doesn't forcibly reinstall the packages I am asking for. With bspm, I
can run BiocManager::install(all_the_dependencies) and have the system
perform the least amount of work required to reach the desired state.
--
Best regards,
Ivan