[R-pkg-devel] Fwd: Re: [CRAN-pretest-archived] CRAN submission SSLR 0.9.0

Hi, I thiks its weird:

The error is:? no applicable method for 'fit' applied to an object of 
class "model_sslr"

In the code:

#' fit
#'
#' @title fit object
#' @param object object
#' @param ... other parameters to be passed
#' @rdname fit
#' @export fit
fit <- function(object, ...){
 ? UseMethod("fit")
}


And:

#' @title Fit with formula and data
#' @description Funtion to fit through the formula
#' @param object is the model
#' @param formula is the formula
#' @param data is the total data train
#' @param ... unused in this case
#' @importFrom rlang quos
#' @rdname fit
#' @export
#' @export fit.model_sslr
fit.model_sslr <- function(object, formula = NULL, data = NULL, ...) {

 ? dots <- quos(...)


 ? if (all(c("x", "y") %in% names(dots)))
 ??? rlang::abort("`fit.model_sslr()` is for the formula methods. Use 
`fit_xy()` instead.")

 ? fit_form_interface <- check_form_interface(formula, data)

 ? x_and_y <- get_x_y(formula, data)

 ? eval_env <- rlang::env()
 ? eval_env$x <- x_and_y$x
 ? eval_env$y <- x_and_y$y

 ? fit_interface <- check_xy_interface(eval_env$x, eval_env$y)

 ? elapsed <- system.time(model <- object$fit_function(eval_env$x, 
eval_env$y))

new_model_sslr_fitted(model,class(model),object$args,colnames(eval_env$x),elapsed,formula) 


}


Thanks

El 2020-03-10 16:19, ligges at statistik.tu-dortmund.de escribi?:

Dear maintainer,

package SSLR_0.9.0.tar.gz does not pass the incoming checks
automatically, please see the following pre-tests:
Windows:
<https://win-builder.r-project.org/incoming_pretest/SSLR_0.9.0_20200310_160158/Windows/00check.log> 

Status: 2 ERRORs, 1 WARNING, 1 NOTE
Debian:
<https://win-builder.r-project.org/incoming_pretest/SSLR_0.9.0_20200310_160158/Debian/00check.log> 

Status: 1 ERROR, 1 WARNING, 1 NOTE



Please fix all problems and resubmit a fixed version via the webform.
If you are not sure how to fix the problems shown, please ask for help
on the R-package-devel mailing list:
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>
If you are fairly certain the rejection is a false positive, please
reply-all to this message and explain.

More details are given in the directory:
<https://win-builder.r-project.org/incoming_pretest/SSLR_0.9.0_20200310_160158/> 

The files will be removed after roughly 7 days.

No strong reverse dependencies to be checked.

Best regards,
CRAN teams' auto-check service

Flavor: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64
Check: CRAN incoming feasibility, Result: NOTE
? Maintainer: 'Francisco Jes??s Palomares Alabarce 
<fpalomares at correo.ugr.es>'

? New submission

? Possibly mis-spelled words in DESCRIPTION:
??? SSLR (23:14)
??? VM (27:37)

? Found the following (possibly) invalid URLs:
??? URL: https://cran.r-project.org/web/packages/RSSL/RSSL.pdf
????? From: inst/doc/introduction.html
??????????? inst/doc/models.html
????? Status: 200
????? Message: OK
????? CRAN URL not in canonical form
??? The canonical URL of the CRAN page for a package is
????? https://CRAN.R-project.org/package=pkgname

? Found the following (possibly) invalid file URI:
??? URI: www.cs.ucr.edu/~eamonn/time_series_data/
????? From: man/coffee.Rd

? The Description field should not start with the package name,
??? 'This package' or similar.

Flavor: r-devel-windows-ix86+x86_64
Check: running examples for arch 'i386', Result: ERROR
? Running examples in 'SSLR-Ex.R' failed
? The error most likely occurred in:

? > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
? > ### Name: COREG
? > ### Title: General Interface for COREG model
? > ### Aliases: COREG
? >
? > ### ** Examples
? >
? > library(tidyverse)
? -- Attaching packages ---------------------------------------
tidyverse 1.3.0 --
? v ggplot2 3.3.0???? v purrr?? 0.3.3
? v tibble? 2.1.3???? v dplyr?? 0.8.5
? v tidyr?? 1.0.2???? v stringr 1.4.0
? v readr?? 1.3.1???? v forcats 0.5.0
? -- Conflicts ------------------------------------------
tidyverse_conflicts() --
? x dplyr::filter() masks stats::filter()
? x dplyr::lag()??? masks stats::lag()
? > library(tidymodels)
? -- Attaching packages --------------------------------------
tidymodels 0.1.0 --
? v broom???? 0.5.5???? v rsample?? 0.0.5
? v dials???? 0.0.4???? v tune????? 0.0.1
? v infer???? 0.5.1???? v workflows 0.1.0
? v parsnip?? 0.0.5???? v yardstick 0.0.5
? v recipes?? 0.1.9
? -- Conflicts -----------------------------------------
tidymodels_conflicts() --
? x scales::discard()?? masks purrr::discard()
? x dplyr::filter()???? masks stats::filter()
? x recipes::fixed()??? masks stringr::fixed()
? x dplyr::lag()??????? masks stats::lag()
? x dials::margin()???? masks ggplot2::margin()
? x yardstick::spec()?? masks readr::spec()
? x recipes::step()???? masks stats::step()
? x recipes::yj_trans() masks scales::yj_trans()
? > library(SSLR)
? >
? > data <- na.omit(airquality)
? > #data <- na.omit(airquality)
? >
? > cls <- which(colnames(data) == "Ozone")
? >
? > colnames(data)[cls]<- "class"
? >
? > set.seed(1)
? > train.index? <- sample(nrow(data), round(0.7 * nrow(data)))
? > train <- data[ train.index,]
? > test? <- data[-train.index,]
? >
? >
? > #% LABELED
? > labeled.index <- sample(nrow(train), round(0.2 * nrow(train)))
? > train[-labeled.index,cls] <- NA
? >
? > m <- COREG(max.iter = 2) %>% fit(class ~ ., data = train)
? Error in UseMethod("fit") :
??? no applicable method for 'fit' applied to an object of class 
"model_sslr"
? Calls: %>% ... _fseq -> freduce -> withVisible -> <Anonymous> -> fit
? Execution halted

Flavor: r-devel-windows-ix86+x86_64
Check: running examples for arch 'x64', Result: ERROR
? Running examples in 'SSLR-Ex.R' failed
? The error most likely occurred in:

? > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
? > ### Name: COREG
? > ### Title: General Interface for COREG model
? > ### Aliases: COREG
? >
? > ### ** Examples
? >
? > library(tidyverse)
? -- Attaching packages ---------------------------------------
tidyverse 1.3.0 --
? v ggplot2 3.3.0???? v purrr?? 0.3.3
? v tibble? 2.1.3???? v dplyr?? 0.8.5
? v tidyr?? 1.0.2???? v stringr 1.4.0
? v readr?? 1.3.1???? v forcats 0.5.0
? -- Conflicts ------------------------------------------
tidyverse_conflicts() --
? x dplyr::filter() masks stats::filter()
? x dplyr::lag()??? masks stats::lag()
? > library(tidymodels)
? -- Attaching packages --------------------------------------
tidymodels 0.1.0 --
? v broom???? 0.5.5???? v rsample?? 0.0.5
? v dials???? 0.0.4???? v tune????? 0.0.1
? v infer???? 0.5.1???? v workflows 0.1.0
? v parsnip?? 0.0.5???? v yardstick 0.0.5
? v recipes?? 0.1.9
? -- Conflicts -----------------------------------------
tidymodels_conflicts() --
? x scales::discard()?? masks purrr::discard()
? x dplyr::filter()???? masks stats::filter()
? x recipes::fixed()??? masks stringr::fixed()
? x dplyr::lag()??????? masks stats::lag()
? x dials::margin()???? masks ggplot2::margin()
? x yardstick::spec()?? masks readr::spec()
? x recipes::step()???? masks stats::step()
? x recipes::yj_trans() masks scales::yj_trans()
? > library(SSLR)
? >
? > data <- na.omit(airquality)
? > #data <- na.omit(airquality)
? >
? > cls <- which(colnames(data) == "Ozone")
? >
? > colnames(data)[cls]<- "class"
? >
? > set.seed(1)
? > train.index? <- sample(nrow(data), round(0.7 * nrow(data)))
? > train <- data[ train.index,]
? > test? <- data[-train.index,]
? >
? >
? > #% LABELED
? > labeled.index <- sample(nrow(train), round(0.2 * nrow(train)))
? > train[-labeled.index,cls] <- NA
? >
? > m <- COREG(max.iter = 2) %>% fit(class ~ ., data = train)
? Error in UseMethod("fit") :
??? no applicable method for 'fit' applied to an object of class 
"model_sslr"
? Calls: %>% ... _fseq -> freduce -> withVisible -> <Anonymous> -> fit
? Execution halted

Flavor: r-devel-windows-ix86+x86_64
Check: re-building of vignette outputs, Result: WARNING
? Error(s) in re-building vignettes:
? --- re-building 'classification.Rmd' using rmarkdown
? Quitting from lines 58-60 (classification.Rmd)
? Error: processing vignette 'classification.Rmd' failed with 
diagnostics:
? no applicable method for 'fit' applied to an object of class 
"model_sslr"
? --- failed re-building 'classification.Rmd'

? --- re-building 'fit.Rmd' using rmarkdown
? --- finished re-building 'fit.Rmd'

? --- re-building 'introduction.Rmd' using rmarkdown
? --- finished re-building 'introduction.Rmd'

? --- re-building 'models.Rmd' using rmarkdown
? --- finished re-building 'models.Rmd'

? --- re-building 'regression.Rmd' using rmarkdown
? Quitting from lines 51-53 (regression.Rmd)
? Error: processing vignette 'regression.Rmd' failed with diagnostics:
? no applicable method for 'fit' applied to an object of class 
"model_sslr"
? --- failed re-building 'regression.Rmd'

? SUMMARY: processing the following files failed:
??? 'classification.Rmd' 'regression.Rmd'

? Error: Vignette re-building failed.
? Execution halted

Flavor: r-devel-linux-x86_64-debian-gcc
Check: examples, Result: ERROR
? Running examples in 'SSLR-Ex.R' failed
? The error most likely occurred in:

? > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
? > ### Name: COREG
? > ### Title: General Interface for COREG model
? > ### Aliases: COREG
? >
? > ### ** Examples
? >
? > library(tidyverse)
? ?????? Attaching packages
????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 

tidyverse 1.3.0 ??????
? ??? ggplot2 3.3.0???? ??? purrr?? 0.3.3
? ??? tibble? 2.1.3???? ??? dplyr?? 0.8.5
? ??? tidyr?? 1.0.2???? ??? stringr 1.4.0
? ??? readr?? 1.3.1???? ??? forcats 0.5.0
? ?????? Conflicts
?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 

tidyverse_conflicts() ??????
? ??? dplyr::filter() masks stats::filter()
? ??? dplyr::lag()??? masks stats::lag()
? > library(tidymodels)
? ?????? Attaching packages
?????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 

tidymodels 0.1.0 ??????
? ??? broom???? 0.5.5???? ??? rsample?? 0.0.5
? ??? dials???? 0.0.4???? ??? tune????? 0.0.1
? ??? infer???? 0.5.1???? ??? workflows 0.1.0
? ??? parsnip?? 0.0.5???? ??? yardstick 0.0.5
? ??? recipes?? 0.1.9
? ?????? Conflicts
??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 

tidymodels_conflicts() ??????
? ??? scales::discard()?? masks purrr::discard()
? ??? dplyr::filter()???? masks stats::filter()
? ??? recipes::fixed()??? masks stringr::fixed()
? ??? dplyr::lag()??????? masks stats::lag()
? ??? dials::margin()???? masks ggplot2::margin()
? ??? yardstick::spec()?? masks readr::spec()
? ??? recipes::step()???? masks stats::step()
? ??? recipes::yj_trans() masks scales::yj_trans()
? > library(SSLR)
? >
? > data <- na.omit(airquality)
? > #data <- na.omit(airquality)
? >
? > cls <- which(colnames(data) == "Ozone")
? >
? > colnames(data)[cls]<- "class"
? >
? > set.seed(1)
? > train.index? <- sample(nrow(data), round(0.7 * nrow(data)))
? > train <- data[ train.index,]
? > test? <- data[-train.index,]
? >
? >
? > #% LABELED
? > labeled.index <- sample(nrow(train), round(0.2 * nrow(train)))
? > train[-labeled.index,cls] <- NA
? >
? > m <- COREG(max.iter = 2) %>% fit(class ~ ., data = train)
? Error in UseMethod("fit") :
??? no applicable method for 'fit' applied to an object of class 
"model_sslr"
? Calls: %>% ... _fseq -> freduce -> withVisible -> <Anonymous> -> fit
? Execution halted

Flavor: r-devel-linux-x86_64-debian-gcc
Check: re-building of vignette outputs, Result: WARNING
? Error(s) in re-building vignettes:
??? ...
? --- re-building 'classification.Rmd' using rmarkdown
? Quitting from lines 58-60 (classification.Rmd)
? Error: processing vignette 'classification.Rmd' failed with 
diagnostics:
? no applicable method for 'fit' applied to an object of class 
"model_sslr"
? --- failed re-building 'classification.Rmd'

? --- re-building 'fit.Rmd' using rmarkdown
? --- finished re-building 'fit.Rmd'

? --- re-building 'introduction.Rmd' using rmarkdown
? --- finished re-building 'introduction.Rmd'

? --- re-building 'models.Rmd' using rmarkdown
? --- finished re-building 'models.Rmd'

? --- re-building 'regression.Rmd' using rmarkdown
? Quitting from lines 51-53 (regression.Rmd)
? Error: processing vignette 'regression.Rmd' failed with diagnostics:
? no applicable method for 'fit' applied to an object of class 
"model_sslr"
? --- failed re-building 'regression.Rmd'

? SUMMARY: processing the following files failed:
??? 'classification.Rmd' 'regression.Rmd'

? Error: Vignette re-building failed.
? Execution halted