[R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

Hi Tomas and others:

Here is the session Info.  I also used the str example both without and
with changing the locale.

 sI <- sessionInfo()
str(sI)
List of 10
 $ R.version :List of 14
  ..$ platform      : chr "x86_64-w64-mingw32"
  ..$ arch          : chr "x86_64"
  ..$ os            : chr "mingw32"
  ..$ system        : chr "x86_64, mingw32"
  ..$ status        : chr ""
  ..$ major         : chr "3"
  ..$ minor         : chr "6.3"
  ..$ year          : chr "2020"
  ..$ month         : chr "02"
  ..$ day           : chr "29"
  ..$ svn rev       : chr "77875"
  ..$ language      : chr "R"
  ..$ version.string: chr "R version 3.6.3 (2020-02-29)"
  ..$ nickname      : chr "Holding the Windsock"
 $ platform  : chr "x86_64-w64-mingw32/x64 (64-bit)"
 $ locale    : chr "LC_COLLATE=English_United
States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United
States.125"| __truncated__
 $ running   : chr "Windows 10 x64 (build 18362)"
 $ RNGkind   : chr [1:3] "Mersenne-Twister" "Inversion" "Rejection"
 $ basePkgs  : chr [1:7] "stats" "graphics" "grDevices" "utils" ...
 $ loadedOnly:List of 1
  ..$ compiler:List of 9
  .. ..$ Package    : chr "compiler"
  .. ..$ Version    : chr "3.6.3"
  .. ..$ Priority   : chr "base"
  .. ..$ Title      : chr "The R Compiler Package"
  .. ..$ Author     : chr "Luke Tierney <luke-tierney at uiowa.edu>"
  .. ..$ Maintainer : chr "R Core Team <R-core at r-project.org>"
  .. ..$ Description: chr "Byte code compiler for R."
  .. ..$ License    : chr "Part of R 3.6.3"
  .. ..$ Built      : chr "R 3.6.3; ; 2020-03-20 04:29:00 UTC; windows"
  .. ..- attr(*, "class")= chr "packageDescription"
  .. ..- attr(*, "file")= chr
"c:/newtimeR/R-3.6.3/library/compiler/Meta/package.rds"
 $ matprod   : chr "default"
 $ BLAS      : chr ""
 $ LAPACK    : chr ""
 - attr(*, "class")= chr "sessionInfo"

Running the str example WITHOUT changing the locale:
## Truncation behavior (<-> correct width measurement) for "long"
non-ASCII:
idx <- c(65313:65338, 65345:65350)
fwch <- intToUtf8(idx) # full width character string: each has width 2
ch <- strtrim(paste(LETTERS, collapse="._"), 64)
(ncc <- c(c.ch = nchar(ch),   w.ch = nchar(ch,   "w"),
+           c.fw = nchar(fwch), w.fw = nchar(fwch, "w")))
c.ch w.ch c.fw w.fw
  64   64   32   64
stopifnot(unname(ncc) == c(64,64, 32, 64))
## nchar.max: 1st line needs an increase of  2  in order to see  1  (in
UTF-$
invisible(lapply(60:66, function(N) str(fwch, nchar.max = N)))
chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+F"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF2"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF26"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF26>"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF26><"| __truncated__
invisible(lapply(60:66, function(N) str( ch , nchar.max = N))) # "1 is 1"
he$
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O."| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P."| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._Q._R._S._T._U._V"

Running the str example WITH changing the locale:

 oloc <- Sys.getlocale("LC_CTYPE")
mbyte.lc <- if(.Platform$OS.type == "windows")
+  "English_United States.28605" else "en_GB.UTF-8"
try(Sys.setlocale("LC_CTYPE", mbyte.lc))
[1] "English_United States.28605"
## Truncation behavior (<-> correct width measurement) for "long"
non-ASCII:
idx <- c(65313:65338, 65345:65350)
fwch <- intToUtf8(idx) # full width character string: each has width 2
ch <- strtrim(paste(LETTERS, collapse="._"), 64)
(ncc <- c(c.ch = nchar(ch),   w.ch = nchar(ch,   "w"),
+           c.fw = nchar(fwch), w.fw = nchar(fwch, "w")))
c.ch w.ch c.fw w.fw
  64   64   32   64
stopifnot(unname(ncc) == c(64,64, 32, 64))
## nchar.max: 1st line needs an increase of  2  in order to see  1  (in
UTF-$
invisible(lapply(60:66, function(N) str(fwch, nchar.max = N)))
Error in strtrim(x.lrg, nchar.max - nc) :
  unsupported conversion from 'UTF-8' in codepage 28605
invisible(lapply(60:66, function(N) str( ch , nchar.max = N))) # "1 is 1"
he$
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O."| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P."| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._Q._R._S._T._U._V"

This is pretty strange.

Thanks for any help.

Sincerely,
Erin

Erin Hodgess, PhD
mailto: erinm.hodgess at gmail.com

On Thu, Mar 19, 2020 at 2:29 AM Tomas Kalibera <tomas.kalibera at gmail.com>
wrote:
Hi Erin,

this comes from examples in ?str. Could you please try to find a minimal
example to reproduce on your system based on that? I would look for
"line needs" in ?str and experiment with reducing the example there
while still getting the error. Once it is minimal, could you please try
also on the official build of R on your machine?

Also it would be nice to have a session info. If it works in the
official build but not your custom build, then one would have to look
also into how the custom build is done.

Thanks
Tomas

On 3/19/20 8:02 AM, Erin Hodgess wrote:
Hello everyone:

I have built the latest version of the OpenBLAS on my Windows 10 machine.
When I run make distribution in R, everything is fine.

However, when I run make check all,  I get the following error:

C:\newtimeR\R-3.6.3\src\gnuwin32>make check-all
Testing examples for package 'base'
Testing examples for package 'tools'
   comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Error: testing 'utils' failed
Execution halted
make[3]: *** [Makefile.win:29: test-Examples-Base] Error 1
make[2]: *** [Makefile.common:185: test-Examples] Error 2
make[1]: *** [Makefile.common:171: test-all-basics] Error 1
make: *** [Makefile:324: check-all] Error 2

And here is the section from the .Rout.fail for utils:

## Multibyte characters in strings (in multibyte locales):
oloc <- Sys.getlocale("LC_CTYPE")
mbyte.lc <- if(.Platform$OS.type == "windows")
+  "English_United States.28605" else "en_GB.UTF-8"
try(Sys.setlocale("LC_CTYPE", mbyte.lc))
[1] "English_United States.28605"
## Truncation behavior (<-> correct width measurement) for "long"
non-ASCII:
idx <- c(65313:65338, 65345:65350)
fwch <- intToUtf8(idx) # full width character string: each has width 2
ch <- strtrim(paste(LETTERS, collapse="._"), 64)
(ncc <- c(c.ch = nchar(ch),   w.ch = nchar(ch,   "w"),
+           c.fw = nchar(fwch), w.fw = nchar(fwch, "w")))
c.ch w.ch c.fw w.fw
   64   64   32   64
stopifnot(unname(ncc) == c(64,64, 32, 64))
## nchar.max: 1st line needs an increase of  2  in order to see  1  (in
UTF-8!):
invisible(lapply(60:66, function(N) str(fwch, nchar.max = N)))
Error in strtrim(x.lrg, nchar.max - nc) :
   unsupported conversion from 'UTF-8' in codepage 28605
Calls: lapply ... FUN -> str -> str.default -> maybe_truncate -> strtrim
Execution halted

Has anyone run into this before, please?

If I run this line-by-line starting at the "idx <-", things are fine.

I also compiled R from source without the OpenBLAS, and it was fine.

Thanks for any suggestions.

Sincerely,
Erin

Erin Hodgess, PhD
mailto: erinm.hodgess at gmail.com

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[R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

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